Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.58■□□□□ 0.72
FOXA1P55317 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
FOXA1P55317 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.58■□□□□ 0.72
FOXA1P55317 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
FOXA1P55317 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
FOXA1P55317 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
FOXA1P55317 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 CDV3P1-201ENST00000471403 739 ntBASIC19.57■□□□□ 0.72
FOXA1P55317 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
FOXA1P55317 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.57■□□□□ 0.72
FOXA1P55317 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.57■□□□□ 0.72
FOXA1P55317 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.57■□□□□ 0.72
FOXA1P55317 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
FOXA1P55317 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA1P55317 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
FOXA1P55317 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.56■□□□□ 0.72
FOXA1P55317 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.56■□□□□ 0.72
FOXA1P55317 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
FOXA1P55317 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
FOXA1P55317 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.56■□□□□ 0.72
FOXA1P55317 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
FOXA1P55317 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.56■□□□□ 0.72
FOXA1P55317 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.56■□□□□ 0.72
FOXA1P55317 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
FOXA1P55317 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.55■□□□□ 0.72
FOXA1P55317 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
FOXA1P55317 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
FOXA1P55317 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.55■□□□□ 0.72
FOXA1P55317 BX119927.1-201ENST00000636596 1552 ntBASIC19.55■□□□□ 0.72
FOXA1P55317 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
FOXA1P55317 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.55■□□□□ 0.72
FOXA1P55317 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.55■□□□□ 0.72
FOXA1P55317 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA1P55317 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.54■□□□□ 0.72
FOXA1P55317 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.54■□□□□ 0.72
FOXA1P55317 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.54■□□□□ 0.72
FOXA1P55317 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
FOXA1P55317 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.54■□□□□ 0.72
FOXA1P55317 NTF6G-201ENST00000591094 616 ntBASIC19.54■□□□□ 0.72
FOXA1P55317 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
FOXA1P55317 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
FOXA1P55317 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
FOXA1P55317 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.54■□□□□ 0.72
FOXA1P55317 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.54■□□□□ 0.72
FOXA1P55317 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 AC116562.4-201ENST00000641316 2276 ntBASIC19.54■□□□□ 0.72
FOXA1P55317 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
FOXA1P55317 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
FOXA1P55317 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.53■□□□□ 0.72
FOXA1P55317 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.53■□□□□ 0.72
FOXA1P55317 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.53■□□□□ 0.72
FOXA1P55317 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms