Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A4P53420 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
COL4A4P53420 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.81■■□□□ 1.08
COL4A4P53420 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.81■■□□□ 1.08
COL4A4P53420 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.81■■□□□ 1.08
COL4A4P53420 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.81■■□□□ 1.08
COL4A4P53420 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A4P53420 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL4A4P53420 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.8■■□□□ 1.08
COL4A4P53420 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL4A4P53420 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
COL4A4P53420 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
COL4A4P53420 AC005521.1-201ENST00000393351 872 ntBASIC21.8■■□□□ 1.08
COL4A4P53420 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.8■■□□□ 1.08
COL4A4P53420 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.8■■□□□ 1.08
COL4A4P53420 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.8■■□□□ 1.08
COL4A4P53420 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.8■■□□□ 1.08
COL4A4P53420 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL4A4P53420 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL4A4P53420 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL4A4P53420 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL4A4P53420 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL4A4P53420 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.79■■□□□ 1.08
COL4A4P53420 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.79■■□□□ 1.08
COL4A4P53420 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.79■■□□□ 1.08
COL4A4P53420 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 MMP23A-201ENST00000234610 1017 ntBASIC21.79■■□□□ 1.08
COL4A4P53420 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A4P53420 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.79■■□□□ 1.08
COL4A4P53420 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.78■■□□□ 1.08
COL4A4P53420 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A4P53420 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 ARMC10P1-201ENST00000313754 855 ntBASIC21.78■■□□□ 1.08
COL4A4P53420 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
COL4A4P53420 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.78■■□□□ 1.08
COL4A4P53420 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A4P53420 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.78■■□□□ 1.08
COL4A4P53420 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A4P53420 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A4P53420 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.78■■□□□ 1.08
COL4A4P53420 REXO1L10P-201ENST00000615707 1290 ntBASIC21.78■■□□□ 1.08
COL4A4P53420 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL4A4P53420 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
COL4A4P53420 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL4A4P53420 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A4P53420 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A4P53420 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.77■■□□□ 1.08
COL4A4P53420 RBM17P1-201ENST00000453646 1190 ntBASIC21.77■■□□□ 1.08
COL4A4P53420 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A4P53420 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL4A4P53420 AF186192.3-201ENST00000583427 947 ntBASIC21.77■■□□□ 1.08
COL4A4P53420 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A4P53420 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
COL4A4P53420 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.77■■□□□ 1.07
COL4A4P53420 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A4P53420 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A4P53420 AL353807.1-201ENST00000427475 662 ntBASIC21.76■■□□□ 1.07
COL4A4P53420 AL390955.1-201ENST00000428694 934 ntBASIC21.76■■□□□ 1.07
COL4A4P53420 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.76■■□□□ 1.07
COL4A4P53420 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A4P53420 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A4P53420 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A4P53420 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A4P53420 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A4P53420 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL4A4P53420 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A4P53420 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A4P53420 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL4A4P53420 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A4P53420 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL4A4P53420 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A4P53420 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL4A4P53420 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A4P53420 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A4P53420 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A4P53420 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
COL4A4P53420 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 TERF1P1-201ENST00000311003 1181 ntBASIC21.75■■□□□ 1.07
COL4A4P53420 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms