Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC079834.2-201ENST00000609776 1949 ntBASIC23.55■■□□□ 1.36
CTCFP49711 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CTCFP49711 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.54■■□□□ 1.36
CTCFP49711 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
CTCFP49711 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CTCFP49711 FDX1P1-201ENST00000449115 551 ntBASIC23.54■■□□□ 1.36
CTCFP49711 AC092647.4-201ENST00000457211 535 ntBASIC23.54■■□□□ 1.36
CTCFP49711 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC23.54■■□□□ 1.36
CTCFP49711 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.54■■□□□ 1.36
CTCFP49711 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CTCFP49711 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CTCFP49711 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
CTCFP49711 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.54■■□□□ 1.36
CTCFP49711 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CTCFP49711 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.53■■□□□ 1.36
CTCFP49711 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.53■■□□□ 1.36
CTCFP49711 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.53■■□□□ 1.36
CTCFP49711 GPX4-207ENST00000589115 812 ntTSL 2 BASIC23.53■■□□□ 1.36
CTCFP49711 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
CTCFP49711 C9orf163-202ENST00000624034 2573 ntBASIC23.53■■□□□ 1.36
CTCFP49711 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CTCFP49711 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CTCFP49711 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CTCFP49711 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 TSPY14P-201ENST00000303979 915 ntBASIC23.52■■□□□ 1.36
CTCFP49711 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
CTCFP49711 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 F2R-202ENST00000505600 442 ntTSL 2 BASIC23.52■■□□□ 1.36
CTCFP49711 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.52■■□□□ 1.36
CTCFP49711 CR392000.1-201ENST00000624770 1228 ntBASIC23.52■■□□□ 1.36
CTCFP49711 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.52■■□□□ 1.36
CTCFP49711 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CTCFP49711 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CTCFP49711 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 AC139887.4-201ENST00000607877 719 ntBASIC23.51■■□□□ 1.35
CTCFP49711 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.51■■□□□ 1.35
CTCFP49711 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
CTCFP49711 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.51■■□□□ 1.35
CTCFP49711 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CTCFP49711 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.51■■□□□ 1.35
CTCFP49711 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.5■■□□□ 1.35
CTCFP49711 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC23.5■■□□□ 1.35
CTCFP49711 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CTCFP49711 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC23.5■■□□□ 1.35
CTCFP49711 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC23.5■■□□□ 1.35
CTCFP49711 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC23.5■■□□□ 1.35
CTCFP49711 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.5■■□□□ 1.35
CTCFP49711 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC23.5■■□□□ 1.35
CTCFP49711 GRAMD4P8-201ENST00000605465 1115 ntBASIC23.5■■□□□ 1.35
CTCFP49711 AC004264.1-201ENST00000608354 794 ntBASIC23.5■■□□□ 1.35
CTCFP49711 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.5■■□□□ 1.35
CTCFP49711 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CTCFP49711 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CTCFP49711 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC23.49■■□□□ 1.35
CTCFP49711 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC23.49■■□□□ 1.35
CTCFP49711 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CTCFP49711 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC23.49■■□□□ 1.35
CTCFP49711 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 TSPY5P-201ENST00000426936 936 ntBASIC23.49■■□□□ 1.35
CTCFP49711 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
CTCFP49711 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.49■■□□□ 1.35
CTCFP49711 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CTCFP49711 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CTCFP49711 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.48■■□□□ 1.35
CTCFP49711 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CTCFP49711 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.48■■□□□ 1.35
CTCFP49711 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CTCFP49711 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CTCFP49711 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC23.48■■□□□ 1.35
CTCFP49711 KSR1P1-201ENST00000446298 240 ntBASIC23.48■■□□□ 1.35
CTCFP49711 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CTCFP49711 AC012313.10-201ENST00000623509 926 ntBASIC23.48■■□□□ 1.35
CTCFP49711 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.48■■□□□ 1.35
CTCFP49711 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms