Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YDR157WYDR157W 402 nt1.92□□□□□ -2.1
UPF3P48412 RTT102YGR275W 474 nt1.92□□□□□ -2.1
UPF3P48412 YIL066W-AYIL066W-A 444 nt1.92□□□□□ -2.1
UPF3P48412 MRPL50YNR022C 420 nt1.92□□□□□ -2.1
UPF3P48412 YCL023CYCL023C 348 nt1.92□□□□□ -2.1
UPF3P48412 DIS3YOL021C 3006 nt1.91□□□□□ -2.1
UPF3P48412 IRR1YIL026C 3453 nt1.91□□□□□ -2.1
UPF3P48412 SPO23YBR250W 1572 nt1.91□□□□□ -2.1
UPF3P48412 RPS24BYIL069C 408 nt1.91□□□□□ -2.1
UPF3P48412 YOR146WYOR146W 306 nt1.91□□□□□ -2.1
UPF3P48412 LHS1YKL073W 2646 nt1.91□□□□□ -2.1
UPF3P48412 RLM1YPL089C 2031 nt1.91□□□□□ -2.1
UPF3P48412 UBP2YOR124C 3819 nt1.91□□□□□ -2.1
UPF3P48412 HDA3YPR179C 1968 nt1.9□□□□□ -2.1
UPF3P48412 YDL011CYDL011C 324 nt1.9□□□□□ -2.11
UPF3P48412 TIM13YGR181W 318 nt1.9□□□□□ -2.11
UPF3P48412 YGR265WYGR265W 411 nt1.9□□□□□ -2.11
UPF3P48412 YLR146W-AYLR146W-A 189 nt1.9□□□□□ -2.11
UPF3P48412 YPL185WYPL185W 396 nt1.9□□□□□ -2.11
UPF3P48412 SSQ1YLR369W 1974 nt1.9□□□□□ -2.11
UPF3P48412 MSC6YOR354C 2079 nt1.89□□□□□ -2.11
UPF3P48412 YER172C-AYER172C-A 381 nt1.89□□□□□ -2.11
UPF3P48412 YAR047CYAR047C 321 nt1.89□□□□□ -2.11
UPF3P48412 RPL9BYNL067W 576 nt1.89□□□□□ -2.11
UPF3P48412 YOL159CYOL159C 516 nt1.89□□□□□ -2.11
UPF3P48412 LEE1YPL054W 906 nt1.89□□□□□ -2.11
UPF3P48412 snR56snR56 88 nt1.88□□□□□ -2.11
UPF3P48412 YDR118W-AYDR118W-A 117 nt1.88□□□□□ -2.11
UPF3P48412 YPR170W-AYPR170W-A 186 nt1.88□□□□□ -2.11
UPF3P48412 ZIP1YDR285W 2628 nt1.88□□□□□ -2.11
UPF3P48412 OSH6YKR003W 1347 nt1.88□□□□□ -2.11
UPF3P48412 HSL1YKL101W 4557 nt1.88□□□□□ -2.11
UPF3P48412 YDR008CYDR008C 351 nt1.87□□□□□ -2.11
UPF3P48412 YHR028W-AYHR028W-A 321 nt1.87□□□□□ -2.11
UPF3P48412 YOR053WYOR053W 342 nt1.87□□□□□ -2.11
UPF3P48412 HHT1YBR010W 411 nt1.87□□□□□ -2.11
UPF3P48412 MYO2YOR326W 4725 nt1.87□□□□□ -2.11
UPF3P48412 YPR012WYPR012W 255 nt1.87□□□□□ -2.11
UPF3P48412 IRC20YLR247C 4671 nt1.87□□□□□ -2.11
UPF3P48412 SEC31YDL195W 3822 nt1.86□□□□□ -2.11
UPF3P48412 LRE1YCL051W 1752 nt1.86□□□□□ -2.11
UPF3P48412 SWF1YDR126W 1011 nt1.86□□□□□ -2.11
UPF3P48412 DAD4YDR320C-A 219 nt1.86□□□□□ -2.11
UPF3P48412 ABM1YJR108W 372 nt1.86□□□□□ -2.11
UPF3P48412 YBR285WYBR285W 435 nt1.86□□□□□ -2.11
UPF3P48412 YCL046WYCL046W 324 nt1.86□□□□□ -2.11
UPF3P48412 ZRG17YNR039C 1818 nt1.86□□□□□ -2.11
UPF3P48412 AGC1YPR021C 2709 nt1.86□□□□□ -2.11
UPF3P48412 GUP1YGL084C 1683 nt1.86□□□□□ -2.11
UPF3P48412 AIM9YER080W 1884 nt1.86□□□□□ -2.11
UPF3P48412 TDA9YML081W 3756 nt1.85□□□□□ -2.11
UPF3P48412 GYP5YPL249C 2685 nt1.85□□□□□ -2.11
UPF3P48412 YDR269CYDR269C 324 nt1.85□□□□□ -2.11
UPF3P48412 YER079WYER079W 633 nt1.85□□□□□ -2.11
UPF3P48412 MCM22YJR135C 720 nt1.85□□□□□ -2.11
UPF3P48412 PAU18YLL064C 363 nt1.85□□□□□ -2.11
UPF3P48412 UBC7YMR022W 498 nt1.85□□□□□ -2.11
UPF3P48412 RPL32YBL092W 393 nt1.85□□□□□ -2.11
UPF3P48412 PAU6YNR076W 363 nt1.85□□□□□ -2.11
UPF3P48412 EFR3YMR212C 2349 nt1.85□□□□□ -2.11
UPF3P48412 NEO1YIL048W 3456 nt1.84□□□□□ -2.11
UPF3P48412 UTP21YLR409C 2820 nt1.84□□□□□ -2.11
UPF3P48412 PKH3YDR466W 2697 nt1.84□□□□□ -2.11
UPF3P48412 HIR3YJR140C 4947 nt1.84□□□□□ -2.12
UPF3P48412 YIL059CYIL059C 366 nt1.83□□□□□ -2.12
UPF3P48412 YJL020W-AYJL020W-A 258 nt1.83□□□□□ -2.12
UPF3P48412 PHS1YJL097W 654 nt1.83□□□□□ -2.12
UPF3P48412 YLR334CYLR334C 381 nt1.83□□□□□ -2.12
UPF3P48412 YOR293C-AYOR293C-A 150 nt1.83□□□□□ -2.12
UPF3P48412 YPL229WYPL229W 621 nt1.83□□□□□ -2.12
UPF3P48412 YNL144CYNL144C 2223 nt1.83□□□□□ -2.12
UPF3P48412 SLY1YDR189W 2001 nt1.83□□□□□ -2.12
UPF3P48412 CTF4YPR135W 2784 nt1.82□□□□□ -2.12
UPF3P48412 MDM20YOL076W 2391 nt1.82□□□□□ -2.12
UPF3P48412 PCF11YDR228C 1881 nt1.82□□□□□ -2.12
UPF3P48412 YGR174W-AYGR174W-A 87 nt1.81□□□□□ -2.12
UPF3P48412 YHR138CYHR138C 345 nt1.81□□□□□ -2.12
UPF3P48412 YKL083WYKL083W 615 nt1.81□□□□□ -2.12
UPF3P48412 TRX1YLR043C 312 nt1.81□□□□□ -2.12
UPF3P48412 MLH3YPL164C 2148 nt1.81□□□□□ -2.12
UPF3P48412 YOR093CYOR093C 4947 nt1.8□□□□□ -2.12
UPF3P48412 SKI3YPR189W 4299 nt1.8□□□□□ -2.12
UPF3P48412 YEL057CYEL057C 702 nt1.8□□□□□ -2.12
UPF3P48412 YHR175W-AYHR175W-A 150 nt1.8□□□□□ -2.12
UPF3P48412 YMR247W-AYMR247W-A 144 nt1.8□□□□□ -2.12
UPF3P48412 YPL261CYPL261C 309 nt1.8□□□□□ -2.12
UPF3P48412 SFB2YNL049C 2631 nt1.8□□□□□ -2.12
UPF3P48412 WIP1YDR374W-A 270 nt1.79□□□□□ -2.12
UPF3P48412 tT(UGU)HtT(UGU)H 72 nt1.79□□□□□ -2.12
UPF3P48412 YLR434CYLR434C 384 nt1.79□□□□□ -2.12
UPF3P48412 BSC3YLR465C 309 nt1.79□□□□□ -2.12
UPF3P48412 SAR1YPL218W 573 nt1.79□□□□□ -2.12
UPF3P48412 MSH5YDL154W 2706 nt1.79□□□□□ -2.12
UPF3P48412 RTR1YER139C 681 nt1.78□□□□□ -2.12
UPF3P48412 YAL068W-AYAL068W-A 255 nt1.78□□□□□ -2.12
UPF3P48412 YML003WYML003W 873 nt1.78□□□□□ -2.12
UPF3P48412 LYS14YDR034C 2373 nt1.78□□□□□ -2.12
UPF3P48412 YOR019WYOR019W 2193 nt1.78□□□□□ -2.13
UPF3P48412 FAB1YFR019W 6837 nt1.77□□□□□ -2.13
UPF3P48412 PXA2YKL188C 2562 nt1.77□□□□□ -2.13
Retrieved 100 of 7,029 protein–RNA pairs in 46.7 ms