Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 FEM1AP1-201ENST00000431297 1995 ntBASIC19.78■□□□□ 0.76
SHMT2P34897 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.78■□□□□ 0.76
SHMT2P34897 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.78■□□□□ 0.76
SHMT2P34897 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHMT2P34897 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
SHMT2P34897 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.77■□□□□ 0.76
SHMT2P34897 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
SHMT2P34897 DUSP5P2-201ENST00000426873 1033 ntBASIC19.77■□□□□ 0.76
SHMT2P34897 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SHMT2P34897 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.77■□□□□ 0.76
SHMT2P34897 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 MIR2861-201ENST00000636310 90 ntBASIC19.77■□□□□ 0.76
SHMT2P34897 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
SHMT2P34897 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHMT2P34897 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
SHMT2P34897 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SHMT2P34897 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.76■□□□□ 0.75
SHMT2P34897 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.76■□□□□ 0.75
SHMT2P34897 AC097658.1-201ENST00000475555 843 ntBASIC19.76■□□□□ 0.75
SHMT2P34897 AC091874.3-201ENST00000512672 1195 ntBASIC19.76■□□□□ 0.75
SHMT2P34897 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.76■□□□□ 0.75
SHMT2P34897 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.76■□□□□ 0.75
SHMT2P34897 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SHMT2P34897 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.76■□□□□ 0.75
SHMT2P34897 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.76■□□□□ 0.75
SHMT2P34897 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHMT2P34897 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 AC006128.1-201ENST00000624704 1661 ntBASIC19.75■□□□□ 0.75
SHMT2P34897 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.75■□□□□ 0.75
SHMT2P34897 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SHMT2P34897 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.75■□□□□ 0.75
SHMT2P34897 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHMT2P34897 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.74■□□□□ 0.75
SHMT2P34897 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.74■□□□□ 0.75
SHMT2P34897 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.74■□□□□ 0.75
SHMT2P34897 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.74■□□□□ 0.75
SHMT2P34897 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.74■□□□□ 0.75
SHMT2P34897 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.74■□□□□ 0.75
SHMT2P34897 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.74■□□□□ 0.75
SHMT2P34897 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.74■□□□□ 0.75
SHMT2P34897 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.74■□□□□ 0.75
SHMT2P34897 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.74■□□□□ 0.75
SHMT2P34897 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHMT2P34897 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms