Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SSX4O60224 CROCCP5-201ENST00000436658 830 ntBASIC18.26■□□□□ 0.51
SSX4O60224 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.26■□□□□ 0.51
SSX4O60224 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 AC104771.1-201ENST00000603335 964 ntBASIC18.26■□□□□ 0.51
SSX4O60224 AL109923.1-201ENST00000618799 583 ntBASIC18.26■□□□□ 0.51
SSX4O60224 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.26■□□□□ 0.51
SSX4O60224 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.26■□□□□ 0.51
SSX4O60224 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX4O60224 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 TNXA-203ENST00000507684 2038 ntBASIC18.25■□□□□ 0.51
SSX4O60224 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 AC009237.3-201ENST00000393279 1427 ntBASIC18.25■□□□□ 0.51
SSX4O60224 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SSX4O60224 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.25■□□□□ 0.51
SSX4O60224 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 AL355802.2-201ENST00000402069 882 ntBASIC18.25■□□□□ 0.51
SSX4O60224 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.25■□□□□ 0.51
SSX4O60224 AC104187.1-201ENST00000607510 612 ntBASIC18.25■□□□□ 0.51
SSX4O60224 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
SSX4O60224 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX4O60224 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
SSX4O60224 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 MIR663A-201ENST00000385250 93 ntBASIC18.24■□□□□ 0.51
SSX4O60224 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.24■□□□□ 0.51
SSX4O60224 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.24■□□□□ 0.51
SSX4O60224 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.24■□□□□ 0.51
SSX4O60224 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX4O60224 NEFHP1-201ENST00000412845 2629 ntBASIC18.24■□□□□ 0.51
SSX4O60224 AC006128.1-201ENST00000624704 1661 ntBASIC18.24■□□□□ 0.51
SSX4O60224 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX4O60224 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.23■□□□□ 0.51
SSX4O60224 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.23■□□□□ 0.51
SSX4O60224 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.23■□□□□ 0.51
SSX4O60224 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.23■□□□□ 0.51
SSX4O60224 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 KRT87P-202ENST00000534226 1464 ntBASIC18.23■□□□□ 0.51
SSX4O60224 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.23■□□□□ 0.51
SSX4O60224 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.23■□□□□ 0.51
SSX4O60224 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SSX4O60224 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SSX4O60224 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SSX4O60224 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX4O60224 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.23■□□□□ 0.51
SSX4O60224 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms