Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 AL049796.1-201ENST00000565336 1766 ntBASIC20.29■□□□□ 0.84
TRIM38O00635 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.29■□□□□ 0.84
TRIM38O00635 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TRIM38O00635 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM38O00635 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM38O00635 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
TRIM38O00635 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM38O00635 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM38O00635 CDV3P1-201ENST00000471403 739 ntBASIC20.28■□□□□ 0.84
TRIM38O00635 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM38O00635 AC100791.3-201ENST00000617619 330 ntBASIC20.28■□□□□ 0.84
TRIM38O00635 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM38O00635 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
TRIM38O00635 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM38O00635 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM38O00635 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
TRIM38O00635 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM38O00635 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM38O00635 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM38O00635 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM38O00635 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.27■□□□□ 0.84
TRIM38O00635 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM38O00635 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
TRIM38O00635 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.27■□□□□ 0.84
TRIM38O00635 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.27■□□□□ 0.84
TRIM38O00635 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
TRIM38O00635 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM38O00635 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM38O00635 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM38O00635 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
TRIM38O00635 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM38O00635 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRIM38O00635 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM38O00635 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM38O00635 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM38O00635 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TRIM38O00635 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM38O00635 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM38O00635 AC007952.6-201ENST00000573168 2673 ntBASIC20.26■□□□□ 0.83
TRIM38O00635 AC003957.1-201ENST00000625108 2673 ntBASIC20.26■□□□□ 0.83
TRIM38O00635 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM38O00635 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TRIM38O00635 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TRIM38O00635 AL596275.1-201ENST00000423464 877 ntBASIC20.25■□□□□ 0.83
TRIM38O00635 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM38O00635 AC008403.3-201ENST00000598924 454 ntBASIC20.25■□□□□ 0.83
TRIM38O00635 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
TRIM38O00635 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM38O00635 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM38O00635 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM38O00635 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM38O00635 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms