Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1AO00555 FSCN1P1-201ENST00000568912 1481 ntBASIC19.28■□□□□ 0.68
CACNA1AO00555 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.28■□□□□ 0.68
CACNA1AO00555 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CACNA1AO00555 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
CACNA1AO00555 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CACNA1AO00555 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1AO00555 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1AO00555 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.27■□□□□ 0.68
CACNA1AO00555 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CACNA1AO00555 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.27■□□□□ 0.68
CACNA1AO00555 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1AO00555 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1AO00555 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.27■□□□□ 0.68
CACNA1AO00555 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.27■□□□□ 0.68
CACNA1AO00555 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CACNA1AO00555 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CACNA1AO00555 C11orf96-202ENST00000528572 1834 ntBASIC19.27■□□□□ 0.67
CACNA1AO00555 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.26■□□□□ 0.67
CACNA1AO00555 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.26■□□□□ 0.67
CACNA1AO00555 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.26■□□□□ 0.67
CACNA1AO00555 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.26■□□□□ 0.67
CACNA1AO00555 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.26■□□□□ 0.67
CACNA1AO00555 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.26■□□□□ 0.67
CACNA1AO00555 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.26■□□□□ 0.67
CACNA1AO00555 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CACNA1AO00555 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.26■□□□□ 0.67
CACNA1AO00555 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.25■□□□□ 0.67
CACNA1AO00555 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.25■□□□□ 0.67
CACNA1AO00555 AC106795.1-205ENST00000512851 1056 ntBASIC19.25■□□□□ 0.67
CACNA1AO00555 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CACNA1AO00555 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CACNA1AO00555 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.25■□□□□ 0.67
CACNA1AO00555 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.25■□□□□ 0.67
CACNA1AO00555 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CACNA1AO00555 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
CACNA1AO00555 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.25■□□□□ 0.67
CACNA1AO00555 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CACNA1AO00555 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CACNA1AO00555 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.24■□□□□ 0.67
CACNA1AO00555 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 HTR5BP-201ENST00000430851 1154 ntBASIC19.24■□□□□ 0.67
CACNA1AO00555 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.24■□□□□ 0.67
CACNA1AO00555 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.24■□□□□ 0.67
CACNA1AO00555 IFNL4P1-201ENST00000607083 540 ntBASIC19.24■□□□□ 0.67
CACNA1AO00555 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.24■□□□□ 0.67
CACNA1AO00555 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CACNA1AO00555 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1AO00555 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.23■□□□□ 0.67
CACNA1AO00555 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1AO00555 AL139424.1-201ENST00000607572 797 ntBASIC19.23■□□□□ 0.67
CACNA1AO00555 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1AO00555 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1AO00555 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CACNA1AO00555 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.23■□□□□ 0.67
CACNA1AO00555 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CACNA1AO00555 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
CACNA1AO00555 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms