Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 AL691432.2-201ENST00000607222 2038 ntBASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM49D1C9J1S8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 AC027612.3-201ENST00000413684 1047 ntBASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 AC091799.1-201ENST00000422823 811 ntBASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 AC142381.2-201ENST00000566120 298 ntBASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM49D1C9J1S8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM49D1C9J1S8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
TRIM49D1C9J1S8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 CCDC92B-201ENST00000575506 885 ntBASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 LINC02228-203ENST00000641970 1355 ntBASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM49D1C9J1S8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
TRIM49D1C9J1S8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms