Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 STAC-204ENST00000457375 1366 ntTSL 2 BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 AC073195.1-201ENST00000607241 877 ntBASIC35.36■■■■□ 3.25
CCDC88BA6NC98 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
CCDC88BA6NC98 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 CBFB-203ENST00000561924 584 ntTSL 5 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC35.35■■■■□ 3.25
CCDC88BA6NC98 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
CCDC88BA6NC98 AP000525.1-201ENST00000608286 694 ntBASIC35.34■■■■□ 3.25
CCDC88BA6NC98 LSR-203ENST00000360798 1963 ntTSL 2 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 PNN-205ENST00000556530 601 ntTSL 2 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 DECR2-212ENST00000627716 352 ntTSL 2 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
CCDC88BA6NC98 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
CCDC88BA6NC98 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC35.32■■■■□ 3.25
CCDC88BA6NC98 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
CCDC88BA6NC98 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC35.32■■■■□ 3.24
CCDC88BA6NC98 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
CCDC88BA6NC98 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC35.32■■■■□ 3.24
CCDC88BA6NC98 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC35.31■■■■□ 3.24
CCDC88BA6NC98 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 AC092865.7-201ENST00000641832 219 ntBASIC35.3■■■■□ 3.24
CCDC88BA6NC98 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC35.3■■■■□ 3.24
CCDC88BA6NC98 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC35.29■■■■□ 3.24
CCDC88BA6NC98 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC35.28■■■■□ 3.24
CCDC88BA6NC98 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC35.28■■■■□ 3.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms