Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 AFG3L1P-217ENST00000557444 2447 ntBASIC16.37■□□□□ 0.21
FOXA2Q9Y261 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 AC112907.3-201ENST00000577781 2400 ntBASIC16.37■□□□□ 0.21
FOXA2Q9Y261 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
FOXA2Q9Y261 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 PCDHAC2-203ENST00000615316 3011 ntBASIC16.36■□□□□ 0.21
FOXA2Q9Y261 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 AC092666.2-201ENST00000613287 246 ntBASIC16.36■□□□□ 0.21
FOXA2Q9Y261 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.36■□□□□ 0.21
FOXA2Q9Y261 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 IKBKGP1-201ENST00000612193 1073 ntBASIC16.35■□□□□ 0.21
FOXA2Q9Y261 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 TCF3P1-201ENST00000423021 1937 ntBASIC16.35■□□□□ 0.21
FOXA2Q9Y261 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
FOXA2Q9Y261 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 MFSD11-216ENST00000590393 1141 ntBASIC16.34■□□□□ 0.21
FOXA2Q9Y261 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 AC011767.1-201ENST00000617410 1153 ntBASIC16.34■□□□□ 0.21
FOXA2Q9Y261 AC010536.3-201ENST00000620306 533 ntBASIC16.34■□□□□ 0.21
FOXA2Q9Y261 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms