Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 AL117328.2-201ENST00000624617 1940 ntBASIC38.74■■■■□ 3.79
SHROOM4Q9ULL8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC38.73■■■■□ 3.79
SHROOM4Q9ULL8 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC38.72■■■■□ 3.79
SHROOM4Q9ULL8 FBXW4P1-201ENST00000426721 2239 ntBASIC38.72■■■■□ 3.79
SHROOM4Q9ULL8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC38.72■■■■□ 3.79
SHROOM4Q9ULL8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC38.72■■■■□ 3.79
SHROOM4Q9ULL8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
SHROOM4Q9ULL8 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC38.71■■■■□ 3.79
SHROOM4Q9ULL8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.79
SHROOM4Q9ULL8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 SAPCD2P4-201ENST00000424595 1171 ntBASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC38.69■■■■□ 3.78
SHROOM4Q9ULL8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 AC005829.2-201ENST00000571422 1056 ntBASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 AC120498.8-201ENST00000614275 531 ntBASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 AC087633.2-202ENST00000565166 1439 ntBASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC38.68■■■■□ 3.78
SHROOM4Q9ULL8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC38.67■■■■□ 3.78
SHROOM4Q9ULL8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC38.66■■■■□ 3.78
SHROOM4Q9ULL8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC38.65■■■■□ 3.78
SHROOM4Q9ULL8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC38.64■■■■□ 3.78
SHROOM4Q9ULL8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC38.63■■■■□ 3.78
SHROOM4Q9ULL8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC38.63■■■■□ 3.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms