Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.58■□□□□ 0.56
TIMP4Q99727 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.58■□□□□ 0.56
TIMP4Q99727 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.58■□□□□ 0.56
TIMP4Q99727 MYC-209ENST00000641252 345 ntBASIC18.58■□□□□ 0.56
TIMP4Q99727 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TIMP4Q99727 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
TIMP4Q99727 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TIMP4Q99727 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TIMP4Q99727 AC116050.2-201ENST00000612102 1779 ntBASIC18.58■□□□□ 0.56
TIMP4Q99727 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TIMP4Q99727 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TIMP4Q99727 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 MCRIP2P1-201ENST00000394346 511 ntBASIC18.57■□□□□ 0.56
TIMP4Q99727 DUSP5P2-201ENST00000426873 1033 ntBASIC18.57■□□□□ 0.56
TIMP4Q99727 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.57■□□□□ 0.56
TIMP4Q99727 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.57■□□□□ 0.56
TIMP4Q99727 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.57■□□□□ 0.56
TIMP4Q99727 CYP2T3P-201ENST00000601990 817 ntBASIC18.57■□□□□ 0.56
TIMP4Q99727 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.57■□□□□ 0.56
TIMP4Q99727 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TIMP4Q99727 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.57■□□□□ 0.56
TIMP4Q99727 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 KRT17P1-201ENST00000399211 1546 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
TIMP4Q99727 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.56■□□□□ 0.56
TIMP4Q99727 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.56■□□□□ 0.56
TIMP4Q99727 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.56■□□□□ 0.56
TIMP4Q99727 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 AC083880.1-201ENST00000608266 535 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 AFG3L1P-217ENST00000557444 2447 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.56■□□□□ 0.56
TIMP4Q99727 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.56■□□□□ 0.56
TIMP4Q99727 AC007952.6-201ENST00000573168 2673 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 AC003957.1-201ENST00000625108 2673 ntBASIC18.56■□□□□ 0.56
TIMP4Q99727 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TIMP4Q99727 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.55■□□□□ 0.56
TIMP4Q99727 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.55■□□□□ 0.56
TIMP4Q99727 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TIMP4Q99727 RNA5SP413-201ENST00000516373 109 ntBASIC18.55■□□□□ 0.56
TIMP4Q99727 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 MIR4651-201ENST00000582622 73 ntBASIC18.55■□□□□ 0.56
TIMP4Q99727 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TIMP4Q99727 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.55■□□□□ 0.56
TIMP4Q99727 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TIMP4Q99727 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TIMP4Q99727 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TIMP4Q99727 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TIMP4Q99727 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms