Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS35Q96QK1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 C2orf69P4-201ENST00000565394 541 ntBASIC20.11■□□□□ 0.81
VPS35Q96QK1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS35Q96QK1 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS35Q96QK1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.1■□□□□ 0.81
VPS35Q96QK1 AC083880.1-201ENST00000608266 535 ntBASIC20.1■□□□□ 0.81
VPS35Q96QK1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS35Q96QK1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
VPS35Q96QK1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS35Q96QK1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS35Q96QK1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS35Q96QK1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS35Q96QK1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS35Q96QK1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS35Q96QK1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS35Q96QK1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS35Q96QK1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS35Q96QK1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS35Q96QK1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS35Q96QK1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.08■□□□□ 0.81
VPS35Q96QK1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS35Q96QK1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VPS35Q96QK1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS35Q96QK1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS35Q96QK1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS35Q96QK1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms