Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
USHBP1Q8N6Y0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 KRT18P21-201ENST00000515767 1272 ntBASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
USHBP1Q8N6Y0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 AC133561.1-201ENST00000568600 2415 ntBASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 FAM210CP-201ENST00000445714 574 ntBASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 LINC01023-201ENST00000606054 436 ntBASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 KRT17P2-201ENST00000300992 1314 ntBASIC26.86■■□□□ 1.89
USHBP1Q8N6Y0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 KRT8P36-201ENST00000489121 1440 ntBASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 RARRES2P10-201ENST00000564312 460 ntBASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
USHBP1Q8N6Y0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 AC087499.1-201ENST00000418141 1075 ntBASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 MIR2861-201ENST00000636310 90 ntBASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
USHBP1Q8N6Y0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 MIR4785-201ENST00000585005 73 ntBASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 AC133561.5-201ENST00000635547 218 ntBASIC26.83■■□□□ 1.89
USHBP1Q8N6Y0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
USHBP1Q8N6Y0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
USHBP1Q8N6Y0 AL117328.2-201ENST00000624617 1940 ntBASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 MIR1224-201ENST00000408193 85 ntBASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms