Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LSM3P62310 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
LSM3P62310 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LSM3P62310 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.26■□□□□ 0.51
LSM3P62310 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.26■□□□□ 0.51
LSM3P62310 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LSM3P62310 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM3P62310 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM3P62310 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LSM3P62310 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM3P62310 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM3P62310 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM3P62310 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LSM3P62310 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.25■□□□□ 0.51
LSM3P62310 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM3P62310 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.25■□□□□ 0.51
LSM3P62310 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LSM3P62310 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LSM3P62310 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LSM3P62310 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LSM3P62310 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
LSM3P62310 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM3P62310 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
LSM3P62310 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.24■□□□□ 0.51
LSM3P62310 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LSM3P62310 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LSM3P62310 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM3P62310 AC021242.3-201ENST00000607598 1377 ntBASIC18.24■□□□□ 0.51
LSM3P62310 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LSM3P62310 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
LSM3P62310 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.23■□□□□ 0.51
LSM3P62310 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LSM3P62310 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.23■□□□□ 0.51
LSM3P62310 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 AC006455.2-201ENST00000429931 906 ntBASIC18.23■□□□□ 0.51
LSM3P62310 AC103724.3-201ENST00000564481 992 ntBASIC18.23■□□□□ 0.51
LSM3P62310 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.23■□□□□ 0.51
LSM3P62310 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LSM3P62310 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LSM3P62310 LTB4R2-202ENST00000528054 3092 ntBASIC18.22■□□□□ 0.51
LSM3P62310 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LSM3P62310 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 AC004987.1-201ENST00000428627 508 ntBASIC18.22■□□□□ 0.51
LSM3P62310 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM3P62310 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.22■□□□□ 0.51
LSM3P62310 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LSM3P62310 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.22■□□□□ 0.51
LSM3P62310 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LSM3P62310 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM3P62310 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.21■□□□□ 0.51
LSM3P62310 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LSM3P62310 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.21■□□□□ 0.51
LSM3P62310 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM3P62310 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LSM3P62310 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LSM3P62310 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM3P62310 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms