Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.31■□□□□ 0.84
CXCL12P48061 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CXCL12P48061 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
CXCL12P48061 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.3■□□□□ 0.84
CXCL12P48061 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.3■□□□□ 0.84
CXCL12P48061 KRT18P57-201ENST00000443599 1254 ntBASIC20.3■□□□□ 0.84
CXCL12P48061 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.3■□□□□ 0.84
CXCL12P48061 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.3■□□□□ 0.84
CXCL12P48061 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.3■□□□□ 0.84
CXCL12P48061 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CXCL12P48061 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
CXCL12P48061 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.29■□□□□ 0.84
CXCL12P48061 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.29■□□□□ 0.84
CXCL12P48061 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.29■□□□□ 0.84
CXCL12P48061 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.29■□□□□ 0.84
CXCL12P48061 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.29■□□□□ 0.84
CXCL12P48061 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.29■□□□□ 0.84
CXCL12P48061 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CXCL12P48061 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CXCL12P48061 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.29■□□□□ 0.84
CXCL12P48061 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.28■□□□□ 0.84
CXCL12P48061 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CXCL12P48061 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.28■□□□□ 0.84
CXCL12P48061 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.28■□□□□ 0.84
CXCL12P48061 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CXCL12P48061 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CXCL12P48061 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL12P48061 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL12P48061 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL12P48061 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL12P48061 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CXCL12P48061 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.27■□□□□ 0.84
CXCL12P48061 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.27■□□□□ 0.84
CXCL12P48061 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.27■□□□□ 0.84
CXCL12P48061 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CXCL12P48061 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CXCL12P48061 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
CXCL12P48061 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.27■□□□□ 0.83
CXCL12P48061 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.26■□□□□ 0.83
CXCL12P48061 CYP2D8P-201ENST00000433633 1490 ntBASIC20.26■□□□□ 0.83
CXCL12P48061 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.26■□□□□ 0.83
CXCL12P48061 TERF1P1-201ENST00000311003 1181 ntBASIC20.26■□□□□ 0.83
CXCL12P48061 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CXCL12P48061 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 FITM1-202ENST00000559294 800 ntBASIC20.26■□□□□ 0.83
CXCL12P48061 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CXCL12P48061 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.25■□□□□ 0.83
CXCL12P48061 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.25■□□□□ 0.83
CXCL12P48061 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.25■□□□□ 0.83
CXCL12P48061 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CXCL12P48061 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CXCL12P48061 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.25■□□□□ 0.83
CXCL12P48061 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
CXCL12P48061 AC116562.2-201ENST00000507042 360 ntBASIC20.25■□□□□ 0.83
CXCL12P48061 CR392000.1-201ENST00000624770 1228 ntBASIC20.25■□□□□ 0.83
CXCL12P48061 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms