Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 YER158W-AYER158W-A 216 nt1.24□□□□□ -2.21
RTR1P40084 ABM1YJR108W 372 nt1.24□□□□□ -2.21
RTR1P40084 YKL183C-AYKL183C-A 213 nt1.24□□□□□ -2.21
RTR1P40084 NUP82YJL061W 2142 nt1.24□□□□□ -2.21
RTR1P40084 FIG4YNL325C 2640 nt1.23□□□□□ -2.21
RTR1P40084 KAR1YNL188W 1302 nt1.23□□□□□ -2.21
RTR1P40084 CDC36YDL165W 576 nt1.23□□□□□ -2.21
RTR1P40084 RTR2YDR066C 591 nt1.23□□□□□ -2.21
RTR1P40084 MPC1YGL080W 393 nt1.23□□□□□ -2.21
RTR1P40084 EMC5YIL027C 426 nt1.23□□□□□ -2.21
RTR1P40084 YJL119CYJL119C 324 nt1.23□□□□□ -2.21
RTR1P40084 CTK3YML112W 891 nt1.23□□□□□ -2.21
RTR1P40084 HHT1YBR010W 411 nt1.23□□□□□ -2.21
RTR1P40084 DGR2YKL121W 2559 nt1.23□□□□□ -2.21
RTR1P40084 YNL284C-BYNL284C-B 5268 nt1.23□□□□□ -2.21
RTR1P40084 MVP1YMR004W 1536 nt1.22□□□□□ -2.21
RTR1P40084 TAD1YGL243W 1203 nt1.22□□□□□ -2.21
RTR1P40084 IRC19YLL033W 693 nt1.22□□□□□ -2.21
RTR1P40084 YOL159CYOL159C 516 nt1.22□□□□□ -2.21
RTR1P40084 FMP23YBR047W 528 nt1.22□□□□□ -2.21
RTR1P40084 YMR324CYMR324C 243 nt1.21□□□□□ -2.22
RTR1P40084 RPS7BYNL096C 573 nt1.21□□□□□ -2.22
RTR1P40084 ZRG17YNR039C 1818 nt1.21□□□□□ -2.22
RTR1P40084 MUK1YPL070W 1839 nt1.21□□□□□ -2.22
RTR1P40084 NUP120YKL057C 3114 nt1.2□□□□□ -2.22
RTR1P40084 YBR012W-AYBR012W-A 1323 nt1.2□□□□□ -2.22
RTR1P40084 YOR142W-AYOR142W-A 1323 nt1.2□□□□□ -2.22
RTR1P40084 YPR158W-AYPR158W-A 1323 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)BtF(GAA)B 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)FtF(GAA)F 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)GtF(GAA)G 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)H1tF(GAA)H1 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)H2tF(GAA)H2 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)MtF(GAA)M 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)P1tF(GAA)P1 73 nt1.2□□□□□ -2.22
RTR1P40084 tF(GAA)P2tF(GAA)P2 73 nt1.2□□□□□ -2.22
RTR1P40084 YLR366WYLR366W 306 nt1.2□□□□□ -2.22
RTR1P40084 UFD2YDL190C 2886 nt1.2□□□□□ -2.22
RTR1P40084 TIM8YJR135W-A 264 nt1.19□□□□□ -2.22
RTR1P40084 RPL37AYLR185W 267 nt1.19□□□□□ -2.22
RTR1P40084 YPT6YLR262C 648 nt1.19□□□□□ -2.22
RTR1P40084 YOR376WYOR376W 369 nt1.19□□□□□ -2.22
RTR1P40084 KAR3YPR141C 2190 nt1.19□□□□□ -2.22
RTR1P40084 MDS3YGL197W 4464 nt1.18□□□□□ -2.22
RTR1P40084 MRPL32YCR003W 552 nt1.18□□□□□ -2.22
RTR1P40084 YDR461C-AYDR461C-A 243 nt1.18□□□□□ -2.22
RTR1P40084 YGL230CYGL230C 444 nt1.18□□□□□ -2.22
RTR1P40084 YIL030W-AYIL030W-A 339 nt1.18□□□□□ -2.22
RTR1P40084 PAM16YJL104W 450 nt1.18□□□□□ -2.22
RTR1P40084 YBL073WYBL073W 312 nt1.18□□□□□ -2.22
RTR1P40084 YNL150WYNL150W 408 nt1.18□□□□□ -2.22
RTR1P40084 YPR063CYPR063C 423 nt1.18□□□□□ -2.22
RTR1P40084 YPR172WYPR172W 603 nt1.18□□□□□ -2.22
RTR1P40084 UTP13YLR222C 2454 nt1.17□□□□□ -2.22
RTR1P40084 OSH6YKR003W 1347 nt1.17□□□□□ -2.22
RTR1P40084 YJR003CYJR003C 1560 nt1.17□□□□□ -2.22
RTR1P40084 SEC3YER008C 4011 nt1.17□□□□□ -2.22
RTR1P40084 RPL34BYIL052C 366 nt1.17□□□□□ -2.22
RTR1P40084 VAM3YOR106W 852 nt1.17□□□□□ -2.22
RTR1P40084 EAF1YDR359C 2949 nt1.17□□□□□ -2.22
RTR1P40084 RRI2YOL117W 1938 nt1.17□□□□□ -2.22
RTR1P40084 REF2YDR195W 1602 nt1.16□□□□□ -2.22
RTR1P40084 LSO2YGR169C-A 279 nt1.16□□□□□ -2.22
RTR1P40084 YGR265WYGR265W 411 nt1.16□□□□□ -2.22
RTR1P40084 SPC1YJR010C-A 285 nt1.16□□□□□ -2.22
RTR1P40084 FCF2YLR051C 654 nt1.16□□□□□ -2.22
RTR1P40084 SPC2YML055W 537 nt1.16□□□□□ -2.22
RTR1P40084 YOR161W-BYOR161W-B 261 nt1.16□□□□□ -2.22
RTR1P40084 YPR146CYPR146C 330 nt1.16□□□□□ -2.22
RTR1P40084 YSY6YBR162W-A 198 nt1.16□□□□□ -2.22
RTR1P40084 YIL142C-AYIL142C-A 333 nt1.15□□□□□ -2.23
RTR1P40084 YBR184WYBR184W 1572 nt1.15□□□□□ -2.23
RTR1P40084 FSH1YHR049W 732 nt1.14□□□□□ -2.23
RTR1P40084 SEC5YDR166C 2916 nt1.14□□□□□ -2.23
RTR1P40084 NST1YNL091W 3723 nt1.13□□□□□ -2.23
RTR1P40084 VAM6YDL077C 3150 nt1.13□□□□□ -2.23
RTR1P40084 YDL211CYDL211C 1119 nt1.13□□□□□ -2.23
RTR1P40084 CWC23YGL128C 852 nt1.13□□□□□ -2.23
RTR1P40084 YGR115CYGR115C 780 nt1.13□□□□□ -2.23
RTR1P40084 YHL009W-AYHL009W-A 1242 nt1.13□□□□□ -2.23
RTR1P40084 RPL40BYKR094C 387 nt1.13□□□□□ -2.23
RTR1P40084 YMR304C-AYMR304C-A 351 nt1.13□□□□□ -2.23
RTR1P40084 ERP4YOR016C 624 nt1.13□□□□□ -2.23
RTR1P40084 YJR029WYJR029W 5268 nt1.13□□□□□ -2.23
RTR1P40084 YPR137C-BYPR137C-B 5268 nt1.13□□□□□ -2.23
RTR1P40084 SWT1YOR166C 1377 nt1.12□□□□□ -2.23
RTR1P40084 YGL109WYGL109W 324 nt1.12□□□□□ -2.23
RTR1P40084 CRG1YHR209W 876 nt1.12□□□□□ -2.23
RTR1P40084 GAL7YBR018C 1101 nt1.12□□□□□ -2.23
RTR1P40084 ATP20YPR020W 348 nt1.12□□□□□ -2.23
RTR1P40084 YPR170CYPR170C 336 nt1.12□□□□□ -2.23
RTR1P40084 POP7YBR167C 423 nt1.12□□□□□ -2.23
RTR1P40084 SPR3YGR059W 1539 nt1.11□□□□□ -2.23
RTR1P40084 YLL054CYLL054C 2532 nt1.11□□□□□ -2.23
RTR1P40084 TIM18YOR297C 579 nt1.11□□□□□ -2.23
RTR1P40084 YCS4YLR272C 3531 nt1.11□□□□□ -2.23
RTR1P40084 YDL073WYDL073W 2955 nt1.11□□□□□ -2.23
RTR1P40084 APL1YJR005W 2103 nt1.1□□□□□ -2.23
RTR1P40084 YDR261W-AYDR261W-A 1317 nt1.1□□□□□ -2.23
RTR1P40084 YFL002W-BYFL002W-B 1317 nt1.1□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 6.1 ms