Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHMT2P34897 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHMT2P34897 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.76
SHMT2P34897 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.83■□□□□ 0.76
SHMT2P34897 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.82■□□□□ 0.76
SHMT2P34897 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.82■□□□□ 0.76
SHMT2P34897 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.82■□□□□ 0.76
SHMT2P34897 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SHMT2P34897 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.82■□□□□ 0.76
SHMT2P34897 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.82■□□□□ 0.76
SHMT2P34897 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.82■□□□□ 0.76
SHMT2P34897 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.82■□□□□ 0.76
SHMT2P34897 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.82■□□□□ 0.76
SHMT2P34897 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 AC027702.1-201ENST00000563810 1770 ntBASIC19.82■□□□□ 0.76
SHMT2P34897 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SHMT2P34897 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHMT2P34897 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.81■□□□□ 0.76
SHMT2P34897 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.81■□□□□ 0.76
SHMT2P34897 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.81■□□□□ 0.76
SHMT2P34897 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHMT2P34897 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHMT2P34897 KRT17P1-201ENST00000399211 1546 ntBASIC19.81■□□□□ 0.76
SHMT2P34897 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SHMT2P34897 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.8■□□□□ 0.76
SHMT2P34897 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
SHMT2P34897 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SHMT2P34897 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.8■□□□□ 0.76
SHMT2P34897 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.8■□□□□ 0.76
SHMT2P34897 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.8■□□□□ 0.76
SHMT2P34897 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SHMT2P34897 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.8■□□□□ 0.76
SHMT2P34897 AC105020.6-201ENST00000621523 1217 ntBASIC19.8■□□□□ 0.76
SHMT2P34897 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.8■□□□□ 0.76
SHMT2P34897 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.8■□□□□ 0.76
SHMT2P34897 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.8■□□□□ 0.76
SHMT2P34897 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.8■□□□□ 0.76
SHMT2P34897 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHMT2P34897 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SHMT2P34897 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SHMT2P34897 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.79■□□□□ 0.76
SHMT2P34897 AC098934.4-201ENST00000564127 592 ntBASIC19.79■□□□□ 0.76
SHMT2P34897 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SHMT2P34897 AL356652.1-201ENST00000615962 565 ntBASIC19.79■□□□□ 0.76
SHMT2P34897 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.79■□□□□ 0.76
SHMT2P34897 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SHMT2P34897 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SHMT2P34897 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SHMT2P34897 PLK5-205ENST00000642079 1969 ntBASIC19.79■□□□□ 0.76
SHMT2P34897 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHMT2P34897 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.78■□□□□ 0.76
SHMT2P34897 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
SHMT2P34897 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms