Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN4P29074 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
PTPN4P29074 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN4P29074 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN4P29074 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.27■□□□□ 0.84
PTPN4P29074 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN4P29074 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN4P29074 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTPN4P29074 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN4P29074 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTPN4P29074 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTPN4P29074 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN4P29074 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN4P29074 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 AC099778.1-201ENST00000568593 1911 ntBASIC20.26■□□□□ 0.83
PTPN4P29074 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 AC104187.1-201ENST00000607510 612 ntBASIC20.26■□□□□ 0.83
PTPN4P29074 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN4P29074 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
PTPN4P29074 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.26■□□□□ 0.83
PTPN4P29074 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN4P29074 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PTPN4P29074 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 CROCCP5-201ENST00000436658 830 ntBASIC20.25■□□□□ 0.83
PTPN4P29074 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
PTPN4P29074 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.25■□□□□ 0.83
PTPN4P29074 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.25■□□□□ 0.83
PTPN4P29074 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 AC003102.1-202ENST00000563394 1796 ntBASIC20.25■□□□□ 0.83
PTPN4P29074 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.25■□□□□ 0.83
PTPN4P29074 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN4P29074 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 AC116562.4-201ENST00000641316 2276 ntBASIC20.24■□□□□ 0.83
PTPN4P29074 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.24■□□□□ 0.83
PTPN4P29074 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.24■□□□□ 0.83
PTPN4P29074 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 AC121338.2-201ENST00000622535 1744 ntBASIC20.24■□□□□ 0.83
PTPN4P29074 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.24■□□□□ 0.83
PTPN4P29074 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTPN4P29074 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.24■□□□□ 0.83
PTPN4P29074 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms