Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL022342.1-201ENST00000400363 863 ntBASIC21.13■□□□□ 0.97
VCANP13611 AL390719.1-204ENST00000412397 1219 ntBASIC21.13■□□□□ 0.97
VCANP13611 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.13■□□□□ 0.97
VCANP13611 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.13■□□□□ 0.97
VCANP13611 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.13■□□□□ 0.97
VCANP13611 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
VCANP13611 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.13■□□□□ 0.97
VCANP13611 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VCANP13611 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.12■□□□□ 0.97
VCANP13611 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.12■□□□□ 0.97
VCANP13611 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.12■□□□□ 0.97
VCANP13611 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.12■□□□□ 0.97
VCANP13611 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.12■□□□□ 0.97
VCANP13611 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.12■□□□□ 0.97
VCANP13611 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.12■□□□□ 0.97
VCANP13611 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 NBPF21P-201ENST00000425093 1451 ntBASIC21.12■□□□□ 0.97
VCANP13611 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 TSPY5P-201ENST00000426936 936 ntBASIC21.12■□□□□ 0.97
VCANP13611 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
VCANP13611 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 CYP21A1P-202ENST00000354927 1481 ntBASIC21.12■□□□□ 0.97
VCANP13611 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VCANP13611 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
VCANP13611 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.11■□□□□ 0.97
VCANP13611 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.11■□□□□ 0.97
VCANP13611 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.11■□□□□ 0.97
VCANP13611 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
VCANP13611 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.11■□□□□ 0.97
VCANP13611 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.11■□□□□ 0.97
VCANP13611 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.11■□□□□ 0.97
VCANP13611 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.11■□□□□ 0.97
VCANP13611 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.11■□□□□ 0.97
VCANP13611 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCANP13611 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
VCANP13611 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.1■□□□□ 0.97
VCANP13611 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.1■□□□□ 0.97
VCANP13611 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.1■□□□□ 0.97
VCANP13611 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.1■□□□□ 0.97
VCANP13611 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.1■□□□□ 0.97
VCANP13611 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
VCANP13611 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCANP13611 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VCANP13611 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.1■□□□□ 0.97
VCANP13611 AL138966.2-201ENST00000621997 464 ntBASIC21.1■□□□□ 0.97
VCANP13611 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.09■□□□□ 0.97
VCANP13611 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.09■□□□□ 0.97
VCANP13611 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.09■□□□□ 0.97
VCANP13611 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
VCANP13611 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VCANP13611 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCANP13611 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VCANP13611 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.08■□□□□ 0.97
VCANP13611 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.08■□□□□ 0.97
VCANP13611 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VCANP13611 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.08■□□□□ 0.97
VCANP13611 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VCANP13611 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.08■□□□□ 0.97
VCANP13611 AC022898.2-201ENST00000616822 1312 ntBASIC21.08■□□□□ 0.97
VCANP13611 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VCANP13611 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.08■□□□□ 0.97
VCANP13611 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.08■□□□□ 0.97
VCANP13611 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.08■□□□□ 0.97
VCANP13611 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VCANP13611 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.08■□□□□ 0.96
VCANP13611 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.08■□□□□ 0.96
VCANP13611 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms