Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN9O95484 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN9O95484 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN9O95484 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CLDN9O95484 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.6■□□□□ 0.73
CLDN9O95484 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN9O95484 MFSD11-216ENST00000590393 1141 ntBASIC19.6■□□□□ 0.73
CLDN9O95484 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.6■□□□□ 0.73
CLDN9O95484 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLDN9O95484 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLDN9O95484 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 AC087633.2-202ENST00000565166 1439 ntBASIC19.59■□□□□ 0.73
CLDN9O95484 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.59■□□□□ 0.73
CLDN9O95484 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CLDN9O95484 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 AL356652.1-201ENST00000615962 565 ntBASIC19.59■□□□□ 0.73
CLDN9O95484 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.59■□□□□ 0.73
CLDN9O95484 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
CLDN9O95484 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLDN9O95484 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN9O95484 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN9O95484 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.58■□□□□ 0.73
CLDN9O95484 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN9O95484 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLDN9O95484 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.58■□□□□ 0.73
CLDN9O95484 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.58■□□□□ 0.73
CLDN9O95484 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CLDN9O95484 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN9O95484 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CLDN9O95484 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.58■□□□□ 0.72
CLDN9O95484 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN9O95484 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.58■□□□□ 0.72
CLDN9O95484 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.58■□□□□ 0.72
CLDN9O95484 AC016405.3-201ENST00000607710 860 ntBASIC19.58■□□□□ 0.72
CLDN9O95484 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN9O95484 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN9O95484 DPP3P2-201ENST00000416030 1696 ntBASIC19.58■□□□□ 0.72
CLDN9O95484 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.58■□□□□ 0.72
CLDN9O95484 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CLDN9O95484 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.58■□□□□ 0.72
CLDN9O95484 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLDN9O95484 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
CLDN9O95484 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
CLDN9O95484 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN9O95484 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN9O95484 CYP21A1P-202ENST00000354927 1481 ntBASIC19.57■□□□□ 0.72
CLDN9O95484 AC006015.1-201ENST00000429970 570 ntBASIC19.57■□□□□ 0.72
CLDN9O95484 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN9O95484 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.57■□□□□ 0.72
CLDN9O95484 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.57■□□□□ 0.72
CLDN9O95484 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CLDN9O95484 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CLDN9O95484 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CLDN9O95484 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLDN9O95484 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.57■□□□□ 0.72
CLDN9O95484 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CLDN9O95484 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CLDN9O95484 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CLDN9O95484 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms