Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.68■□□□□ 0.74
UBFD1O14562 UBE2DNL-204ENST00000602536 740 ntBASIC19.68■□□□□ 0.74
UBFD1O14562 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.68■□□□□ 0.74
UBFD1O14562 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
UBFD1O14562 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.68■□□□□ 0.74
UBFD1O14562 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
UBFD1O14562 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.67■□□□□ 0.74
UBFD1O14562 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.67■□□□□ 0.74
UBFD1O14562 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
UBFD1O14562 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.67■□□□□ 0.74
UBFD1O14562 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
UBFD1O14562 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
UBFD1O14562 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
UBFD1O14562 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
UBFD1O14562 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.66■□□□□ 0.74
UBFD1O14562 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.66■□□□□ 0.74
UBFD1O14562 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
UBFD1O14562 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
UBFD1O14562 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
UBFD1O14562 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.65■□□□□ 0.74
UBFD1O14562 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
UBFD1O14562 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.65■□□□□ 0.74
UBFD1O14562 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.65■□□□□ 0.74
UBFD1O14562 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.65■□□□□ 0.74
UBFD1O14562 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.65■□□□□ 0.74
UBFD1O14562 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.65■□□□□ 0.74
UBFD1O14562 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
UBFD1O14562 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
UBFD1O14562 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.64■□□□□ 0.74
UBFD1O14562 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UBFD1O14562 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
UBFD1O14562 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.64■□□□□ 0.74
UBFD1O14562 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UBFD1O14562 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
UBFD1O14562 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
UBFD1O14562 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
UBFD1O14562 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
UBFD1O14562 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBFD1O14562 KRT19P1-201ENST00000405746 1186 ntBASIC19.64■□□□□ 0.73
UBFD1O14562 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.64■□□□□ 0.73
UBFD1O14562 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
UBFD1O14562 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.64■□□□□ 0.73
UBFD1O14562 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.64■□□□□ 0.73
UBFD1O14562 BX119927.1-201ENST00000636596 1552 ntBASIC19.64■□□□□ 0.73
UBFD1O14562 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBFD1O14562 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.64■□□□□ 0.73
UBFD1O14562 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
UBFD1O14562 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
UBFD1O14562 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.64■□□□□ 0.73
UBFD1O14562 AC116562.4-201ENST00000641316 2276 ntBASIC19.64■□□□□ 0.73
UBFD1O14562 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
UBFD1O14562 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
UBFD1O14562 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
UBFD1O14562 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBFD1O14562 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UBFD1O14562 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UBFD1O14562 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
UBFD1O14562 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.63■□□□□ 0.73
UBFD1O14562 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
UBFD1O14562 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.63■□□□□ 0.73
UBFD1O14562 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms