Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC092720.2-201ENST00000602388 1665 ntBASIC17.19■□□□□ 0.34
SDCBPO00560 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDCBPO00560 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SDCBPO00560 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.19■□□□□ 0.34
SDCBPO00560 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SDCBPO00560 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 POU5F1P4-201ENST00000413175 1085 ntBASIC17.18■□□□□ 0.34
SDCBPO00560 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.18■□□□□ 0.34
SDCBPO00560 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.18■□□□□ 0.34
SDCBPO00560 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDCBPO00560 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.18■□□□□ 0.34
SDCBPO00560 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 TCF3P1-201ENST00000423021 1937 ntBASIC17.17■□□□□ 0.34
SDCBPO00560 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SDCBPO00560 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.17■□□□□ 0.34
SDCBPO00560 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.17■□□□□ 0.34
SDCBPO00560 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SDCBPO00560 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.17■□□□□ 0.34
SDCBPO00560 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SDCBPO00560 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.17■□□□□ 0.34
SDCBPO00560 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.17■□□□□ 0.34
SDCBPO00560 AC120498.10-201ENST00000621827 505 ntBASIC17.17■□□□□ 0.34
SDCBPO00560 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SDCBPO00560 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDCBPO00560 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SDCBPO00560 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.16■□□□□ 0.34
SDCBPO00560 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.16■□□□□ 0.34
SDCBPO00560 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.16■□□□□ 0.34
SDCBPO00560 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDCBPO00560 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.15■□□□□ 0.34
SDCBPO00560 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 SMG8-203ENST00000578922 2178 ntBASIC17.15■□□□□ 0.34
SDCBPO00560 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.15■□□□□ 0.34
SDCBPO00560 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.15■□□□□ 0.34
SDCBPO00560 AC138907.5-202ENST00000569484 235 ntBASIC17.15■□□□□ 0.34
SDCBPO00560 TERF1P2-201ENST00000583350 1212 ntBASIC17.15■□□□□ 0.34
SDCBPO00560 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.15■□□□□ 0.34
SDCBPO00560 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
SDCBPO00560 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SDCBPO00560 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SDCBPO00560 AC116562.4-201ENST00000641316 2276 ntBASIC17.14■□□□□ 0.33
SDCBPO00560 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SDCBPO00560 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.14■□□□□ 0.33
SDCBPO00560 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms