Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L2-201ENST00000561772 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L6-201ENST00000626483 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L1-201ENST00000627662 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L8-201ENST00000629013 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L3-201ENST00000630187 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L7-201ENST00000630678 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 DUX4L5-201ENST00000630834 1275 ntBASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM49D1C9J1S8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 AC104187.1-201ENST00000607510 612 ntBASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM49D1C9J1S8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
TRIM49D1C9J1S8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 DPP3P2-201ENST00000416030 1696 ntBASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM49D1C9J1S8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 AP001160.3-201ENST00000601484 763 ntBASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM49D1C9J1S8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 KRT8P36-201ENST00000489121 1440 ntBASIC20.24■□□□□ 0.83
TRIM49D1C9J1S8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms