Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 NBPF21P-201ENST00000425093 1451 ntBASIC35.48■■■■□ 3.27
CCDC88BA6NC98 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 AC027702.1-201ENST00000563810 1770 ntBASIC35.47■■■■□ 3.27
CCDC88BA6NC98 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 ECEL1P1-201ENST00000373592 1742 ntBASIC35.47■■■■□ 3.27
CCDC88BA6NC98 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 FAM197Y1-201ENST00000421178 764 ntBASIC35.47■■■■□ 3.27
CCDC88BA6NC98 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CCDC88BA6NC98 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 PARN-205ENST00000539279 1557 ntTSL 2 BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
CCDC88BA6NC98 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 AL353807.1-201ENST00000427475 662 ntBASIC35.45■■■■□ 3.27
CCDC88BA6NC98 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 NUDT16P1-203ENST00000513809 620 ntBASIC35.45■■■■□ 3.27
CCDC88BA6NC98 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC35.45■■■■□ 3.27
CCDC88BA6NC98 TUB-203ENST00000534099 1759 ntTSL 2 BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
CCDC88BA6NC98 PTBP1P-201ENST00000554374 1601 ntBASIC35.44■■■■□ 3.26
CCDC88BA6NC98 AC079598.2-202ENST00000546624 1451 ntBASIC35.43■■■■□ 3.26
CCDC88BA6NC98 TMPOP1-202ENST00000424642 1267 ntBASIC35.43■■■■□ 3.26
CCDC88BA6NC98 RBM17P1-201ENST00000453646 1190 ntBASIC35.43■■■■□ 3.26
CCDC88BA6NC98 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC35.43■■■■□ 3.26
CCDC88BA6NC98 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 REXO1L10P-201ENST00000615707 1290 ntBASIC35.42■■■■□ 3.26
CCDC88BA6NC98 AL121906.2-201ENST00000621597 723 ntBASIC35.42■■■■□ 3.26
CCDC88BA6NC98 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC35.42■■■■□ 3.26
CCDC88BA6NC98 MMP23A-201ENST00000234610 1017 ntBASIC35.41■■■■□ 3.26
CCDC88BA6NC98 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 MIR6786-201ENST00000616843 113 ntBASIC35.41■■■■□ 3.26
CCDC88BA6NC98 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC35.41■■■■□ 3.26
CCDC88BA6NC98 AC145285.6-201ENST00000604632 637 ntBASIC35.41■■■■□ 3.26
CCDC88BA6NC98 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 AC233723.2-201ENST00000623798 2106 ntBASIC35.4■■■■□ 3.26
CCDC88BA6NC98 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC35.4■■■■□ 3.26
CCDC88BA6NC98 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 P4HB-223ENST00000576390 439 ntTSL 4 BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC35.39■■■■□ 3.26
CCDC88BA6NC98 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC35.38■■■■□ 3.25
CCDC88BA6NC98 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC35.38■■■■□ 3.25
CCDC88BA6NC98 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
CCDC88BA6NC98 AL355355.2-201ENST00000442321 338 ntBASIC35.38■■■■□ 3.25
CCDC88BA6NC98 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC35.38■■■■□ 3.25
CCDC88BA6NC98 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC35.37■■■■□ 3.25
CCDC88BA6NC98 KRT18P35-201ENST00000510488 1269 ntBASIC35.37■■■■□ 3.25
CCDC88BA6NC98 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC35.37■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms