Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 AL512625.2-201ENST00000417533 625 ntBASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 PGM5P4-201ENST00000421970 445 ntBASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 AC006970.2-201ENST00000450065 779 ntBASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 CYP2T3P-201ENST00000601990 817 ntBASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.23■□□□□ 0.67
ATG4BQ9Y4P1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 KRT18P68-201ENST00000392293 1000 ntBASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 AF201337.1-201ENST00000520239 748 ntBASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 AC105036.2-201ENST00000569468 176 ntBASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4BQ9Y4P1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
ATG4BQ9Y4P1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 HLA-L-209ENST00000420110 1011 ntBASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 AL512408.1-201ENST00000569378 2000 ntBASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms