Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
PCIF1Q9H4Z3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
PCIF1Q9H4Z3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PCIF1Q9H4Z3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 BX276092.2-201ENST00000417668 665 ntBASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 TSPY6P-201ENST00000448518 926 ntBASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 AL109923.1-201ENST00000618799 583 ntBASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.25■■□□□ 1.15
PCIF1Q9H4Z3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCIF1Q9H4Z3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 MIPEPP3-201ENST00000412105 444 ntBASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.23■■□□□ 1.15
PCIF1Q9H4Z3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 SLC29A4P1-201ENST00000398760 971 ntBASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 HLA-L-209ENST00000420110 1011 ntBASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 PGM5P4-201ENST00000421970 445 ntBASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 AC104771.1-201ENST00000603335 964 ntBASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PCIF1Q9H4Z3 AP005212.1-201ENST00000581547 1997 ntBASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 AC105020.6-201ENST00000621523 1217 ntBASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
PCIF1Q9H4Z3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
PCIF1Q9H4Z3 AC092720.2-201ENST00000602388 1665 ntBASIC22.2■■□□□ 1.15
PCIF1Q9H4Z3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 AC020907.5-201ENST00000624372 1936 ntBASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 LSM12P1-201ENST00000411836 588 ntBASIC22.2■■□□□ 1.14
PCIF1Q9H4Z3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms