Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TTC28Q96AY4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.91■□□□□ 0.94
TTC28Q96AY4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.91■□□□□ 0.94
TTC28Q96AY4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TTC28Q96AY4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.91■□□□□ 0.94
TTC28Q96AY4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TTC28Q96AY4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.91■□□□□ 0.94
TTC28Q96AY4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TTC28Q96AY4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.91■□□□□ 0.94
TTC28Q96AY4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TTC28Q96AY4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.9■□□□□ 0.94
TTC28Q96AY4 AC022898.2-201ENST00000616822 1312 ntBASIC20.9■□□□□ 0.94
TTC28Q96AY4 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.9■□□□□ 0.94
TTC28Q96AY4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TTC28Q96AY4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.9■□□□□ 0.94
TTC28Q96AY4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.9■□□□□ 0.94
TTC28Q96AY4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TTC28Q96AY4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.9■□□□□ 0.94
TTC28Q96AY4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TTC28Q96AY4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
TTC28Q96AY4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TTC28Q96AY4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TTC28Q96AY4 AC092183.1-201ENST00000469884 875 ntBASIC20.89■□□□□ 0.94
TTC28Q96AY4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.89■□□□□ 0.94
TTC28Q96AY4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TTC28Q96AY4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TTC28Q96AY4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TTC28Q96AY4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
TTC28Q96AY4 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 AC004812.2-201ENST00000611079 2094 ntBASIC20.89■□□□□ 0.93
TTC28Q96AY4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TTC28Q96AY4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TTC28Q96AY4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TTC28Q96AY4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TTC28Q96AY4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.88■□□□□ 0.93
TTC28Q96AY4 AC003102.1-202ENST00000563394 1796 ntBASIC20.88■□□□□ 0.93
TTC28Q96AY4 KRT16P1-201ENST00000399124 1418 ntBASIC20.88■□□□□ 0.93
TTC28Q96AY4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TTC28Q96AY4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.88■□□□□ 0.93
TTC28Q96AY4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.88■□□□□ 0.93
TTC28Q96AY4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TTC28Q96AY4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.87■□□□□ 0.93
TTC28Q96AY4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TTC28Q96AY4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.87■□□□□ 0.93
TTC28Q96AY4 UNC93B7-201ENST00000509439 705 ntBASIC20.87■□□□□ 0.93
TTC28Q96AY4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.87■□□□□ 0.93
TTC28Q96AY4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TTC28Q96AY4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TTC28Q96AY4 AL359075.1-203ENST00000462729 1002 ntBASIC20.86■□□□□ 0.93
TTC28Q96AY4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TTC28Q96AY4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TTC28Q96AY4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 C11orf96-202ENST00000528572 1834 ntBASIC20.86■□□□□ 0.93
TTC28Q96AY4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TTC28Q96AY4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TTC28Q96AY4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.86■□□□□ 0.93
TTC28Q96AY4 AL121749.1-202ENST00000609313 2153 ntBASIC20.86■□□□□ 0.93
TTC28Q96AY4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 COX11P1-201ENST00000489116 835 ntBASIC20.85■□□□□ 0.93
TTC28Q96AY4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.85■□□□□ 0.93
TTC28Q96AY4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 AC117500.6-201ENST00000624871 588 ntBASIC20.85■□□□□ 0.93
TTC28Q96AY4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms