Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 AC245052.3-201ENST00000450182 901 ntBASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 AC010141.2-201ENST00000452426 721 ntBASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 KRT18P61-201ENST00000585825 1298 ntBASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 KRT16P2-201ENST00000414673 1423 ntBASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCHCR1Q8TD31 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 AC099778.1-201ENST00000568593 1911 ntBASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 AC120498.10-201ENST00000621827 505 ntBASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.1■□□□□ 0.97
CCHCR1Q8TD31 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 AC137761.2-201ENST00000561729 223 ntBASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 AC145350.3-201ENST00000569033 163 ntBASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCHCR1Q8TD31 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 AC016769.1-201ENST00000409132 1010 ntBASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 AL020996.1-203ENST00000536896 2307 ntBASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCHCR1Q8TD31 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCHCR1Q8TD31 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.08■□□□□ 0.96
CCHCR1Q8TD31 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCHCR1Q8TD31 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.08■□□□□ 0.96
CCHCR1Q8TD31 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 KRT18P20-201ENST00000548986 1279 ntBASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 AC022517.1-201ENST00000592429 346 ntBASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 RARRES2P11-201ENST00000635158 484 ntBASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCHCR1Q8TD31 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms