Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 AC233263.1-201ENST00000578059 224 ntBASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC60Q8IWA6 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 GCSHP5-201ENST00000443090 522 ntBASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 AC005829.2-201ENST00000571422 1056 ntBASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 AC007375.3-201ENST00000600936 2314 ntBASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC60Q8IWA6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC60Q8IWA6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
CCDC60Q8IWA6 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC60Q8IWA6 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.64■■□□□ 1.21
CCDC60Q8IWA6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 AC006128.1-201ENST00000624704 1661 ntBASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 AC006557.6-201ENST00000623071 864 ntBASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CCDC60Q8IWA6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC60Q8IWA6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 AC069544.1-201ENST00000609399 999 ntBASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CCDC60Q8IWA6 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
CCDC60Q8IWA6 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms