Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LDB1Q86U70 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LDB1Q86U70 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.27■□□□□ 0.84
LDB1Q86U70 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
LDB1Q86U70 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 AL162377.1-201ENST00000618844 1793 ntBASIC20.27■□□□□ 0.84
LDB1Q86U70 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.27■□□□□ 0.84
LDB1Q86U70 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.27■□□□□ 0.84
LDB1Q86U70 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.27■□□□□ 0.84
LDB1Q86U70 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.27■□□□□ 0.84
LDB1Q86U70 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.27■□□□□ 0.84
LDB1Q86U70 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.27■□□□□ 0.84
LDB1Q86U70 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LDB1Q86U70 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.27■□□□□ 0.84
LDB1Q86U70 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
LDB1Q86U70 KRT8P36-201ENST00000489121 1440 ntBASIC20.27■□□□□ 0.83
LDB1Q86U70 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LDB1Q86U70 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.26■□□□□ 0.83
LDB1Q86U70 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.26■□□□□ 0.83
LDB1Q86U70 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.26■□□□□ 0.83
LDB1Q86U70 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LDB1Q86U70 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.26■□□□□ 0.83
LDB1Q86U70 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LDB1Q86U70 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.26■□□□□ 0.83
LDB1Q86U70 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LDB1Q86U70 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.25■□□□□ 0.83
LDB1Q86U70 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
LDB1Q86U70 CYP21A1P-202ENST00000354927 1481 ntBASIC20.25■□□□□ 0.83
LDB1Q86U70 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LDB1Q86U70 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.25■□□□□ 0.83
LDB1Q86U70 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LDB1Q86U70 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
LDB1Q86U70 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB1Q86U70 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.25■□□□□ 0.83
LDB1Q86U70 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LDB1Q86U70 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDB1Q86U70 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDB1Q86U70 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.24■□□□□ 0.83
LDB1Q86U70 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LDB1Q86U70 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LDB1Q86U70 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
LDB1Q86U70 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LDB1Q86U70 AC007322.1-201ENST00000426983 750 ntBASIC20.24■□□□□ 0.83
LDB1Q86U70 CYP2T1P-201ENST00000432607 1285 ntBASIC20.24■□□□□ 0.83
LDB1Q86U70 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms