Protein–RNA interactions for Protein: Q6PIV2

FOXR1, Forkhead box protein R1, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1Q6PIV2 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXR1Q6PIV2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 AL512408.1-201ENST00000569378 2000 ntBASIC21.09■□□□□ 0.97
FOXR1Q6PIV2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 AC005332.8-201ENST00000622750 2735 ntBASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.08■□□□□ 0.97
FOXR1Q6PIV2 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
FOXR1Q6PIV2 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 AC099778.1-201ENST00000568593 1911 ntBASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 AC020907.5-201ENST00000624372 1936 ntBASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 AC007613.1-201ENST00000572811 2597 ntBASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 AL162377.1-201ENST00000618844 1793 ntBASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
FOXR1Q6PIV2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
FOXR1Q6PIV2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 KRT18P61-201ENST00000585825 1298 ntBASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXR1Q6PIV2 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms