Protein–RNA interactions for Protein: Q5TC12

ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

Predicted RBP Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1Q5TC12 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATPAF1Q5TC12 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATPAF1Q5TC12 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 AL020996.1-203ENST00000536896 2307 ntBASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 AC112907.3-201ENST00000577781 2400 ntBASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
ATPAF1Q5TC12 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
ATPAF1Q5TC12 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATPAF1Q5TC12 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 SLC7A5P1-201ENST00000568957 537 ntBASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 AC120498.10-201ENST00000621827 505 ntBASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATPAF1Q5TC12 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATPAF1Q5TC12 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms