Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.91■□□□□ 0.94
COPAP53621 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COPAP53621 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.91■□□□□ 0.94
COPAP53621 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.9■□□□□ 0.94
COPAP53621 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
COPAP53621 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.9■□□□□ 0.94
COPAP53621 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.9■□□□□ 0.94
COPAP53621 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 MCRIP2P1-201ENST00000394346 511 ntBASIC20.9■□□□□ 0.94
COPAP53621 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
COPAP53621 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 AC098590.1-201ENST00000468126 897 ntBASIC20.9■□□□□ 0.94
COPAP53621 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COPAP53621 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.9■□□□□ 0.94
COPAP53621 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.9■□□□□ 0.94
COPAP53621 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.9■□□□□ 0.94
COPAP53621 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.9■□□□□ 0.94
COPAP53621 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COPAP53621 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COPAP53621 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COPAP53621 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COPAP53621 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.89■□□□□ 0.94
COPAP53621 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.89■□□□□ 0.94
COPAP53621 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COPAP53621 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COPAP53621 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 AC007322.3-201ENST00000426526 701 ntBASIC20.89■□□□□ 0.93
COPAP53621 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.89■□□□□ 0.93
COPAP53621 UNC93B5-201ENST00000530315 699 ntBASIC20.89■□□□□ 0.93
COPAP53621 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.89■□□□□ 0.93
COPAP53621 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.89■□□□□ 0.93
COPAP53621 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COPAP53621 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COPAP53621 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.88■□□□□ 0.93
COPAP53621 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COPAP53621 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
COPAP53621 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.88■□□□□ 0.93
COPAP53621 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.88■□□□□ 0.93
COPAP53621 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.88■□□□□ 0.93
COPAP53621 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.88■□□□□ 0.93
COPAP53621 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COPAP53621 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COPAP53621 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COPAP53621 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.87■□□□□ 0.93
COPAP53621 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
COPAP53621 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
COPAP53621 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.87■□□□□ 0.93
COPAP53621 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.87■□□□□ 0.93
COPAP53621 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COPAP53621 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COPAP53621 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.87■□□□□ 0.93
COPAP53621 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COPAP53621 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COPAP53621 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.86■□□□□ 0.93
COPAP53621 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COPAP53621 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.86■□□□□ 0.93
COPAP53621 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.86■□□□□ 0.93
COPAP53621 RPS2P52-201ENST00000469610 820 ntBASIC20.86■□□□□ 0.93
COPAP53621 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 AC026366.1-201ENST00000488803 879 ntBASIC20.86■□□□□ 0.93
COPAP53621 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
COPAP53621 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.86■□□□□ 0.93
COPAP53621 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COPAP53621 AC006058.3-201ENST00000606217 1069 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms