Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIG3P49916 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIG3P49916 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIG3P49916 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.22■□□□□ 0.99
LIG3P49916 AC098818.2-201ENST00000564925 2320 ntBASIC21.22■□□□□ 0.99
LIG3P49916 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.22■□□□□ 0.99
LIG3P49916 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIG3P49916 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.21■□□□□ 0.99
LIG3P49916 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LIG3P49916 KRT18P11-201ENST00000435214 1283 ntBASIC21.21■□□□□ 0.99
LIG3P49916 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 AC010141.2-201ENST00000452426 721 ntBASIC21.21■□□□□ 0.99
LIG3P49916 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.21■□□□□ 0.99
LIG3P49916 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.21■□□□□ 0.99
LIG3P49916 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.21■□□□□ 0.99
LIG3P49916 LETM1P2-201ENST00000597330 2178 ntBASIC21.21■□□□□ 0.99
LIG3P49916 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LIG3P49916 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
LIG3P49916 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIG3P49916 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
LIG3P49916 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.2■□□□□ 0.98
LIG3P49916 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
LIG3P49916 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 AC090192.1-201ENST00000517740 490 ntBASIC21.2■□□□□ 0.98
LIG3P49916 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.2■□□□□ 0.98
LIG3P49916 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.2■□□□□ 0.98
LIG3P49916 AC080038.1-201ENST00000611274 1154 ntBASIC21.2■□□□□ 0.98
LIG3P49916 BID-214ENST00000617586 542 ntTSL 5 BASIC21.2■□□□□ 0.98
LIG3P49916 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.2■□□□□ 0.98
LIG3P49916 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
LIG3P49916 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 GABARAPL3-202ENST00000624044 1851 ntBASIC21.2■□□□□ 0.98
LIG3P49916 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIG3P49916 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
LIG3P49916 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
LIG3P49916 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.19■□□□□ 0.98
LIG3P49916 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.19■□□□□ 0.98
LIG3P49916 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.19■□□□□ 0.98
LIG3P49916 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.19■□□□□ 0.98
LIG3P49916 UBE2DNL-204ENST00000602536 740 ntBASIC21.19■□□□□ 0.98
LIG3P49916 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.19■□□□□ 0.98
LIG3P49916 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.19■□□□□ 0.98
LIG3P49916 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIG3P49916 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LIG3P49916 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.18■□□□□ 0.98
LIG3P49916 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.18■□□□□ 0.98
LIG3P49916 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LIG3P49916 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIG3P49916 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
LIG3P49916 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.17■□□□□ 0.98
LIG3P49916 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.17■□□□□ 0.98
LIG3P49916 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIG3P49916 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms