Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFRSF4P43489 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.54■□□□□ 0.88
TNFRSF4P43489 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 Z98882.1-201ENST00000622160 2253 ntBASIC20.53■□□□□ 0.88
TNFRSF4P43489 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TNFRSF4P43489 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TNFRSF4P43489 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 TSPY7P-201ENST00000431358 1114 ntBASIC20.52■□□□□ 0.88
TNFRSF4P43489 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TNFRSF4P43489 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.52■□□□□ 0.88
TNFRSF4P43489 AL117328.2-201ENST00000624617 1940 ntBASIC20.52■□□□□ 0.88
TNFRSF4P43489 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TNFRSF4P43489 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.52■□□□□ 0.87
TNFRSF4P43489 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TNFRSF4P43489 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.51■□□□□ 0.87
TNFRSF4P43489 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.51■□□□□ 0.87
TNFRSF4P43489 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TNFRSF4P43489 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TNFRSF4P43489 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 AC211429.1-201ENST00000415277 523 ntBASIC20.5■□□□□ 0.87
TNFRSF4P43489 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 MIR4785-201ENST00000585005 73 ntBASIC20.5■□□□□ 0.87
TNFRSF4P43489 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
TNFRSF4P43489 AC121338.2-201ENST00000622535 1744 ntBASIC20.5■□□□□ 0.87
TNFRSF4P43489 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TNFRSF4P43489 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TNFRSF4P43489 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.49■□□□□ 0.87
TNFRSF4P43489 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 1190.6 ms