Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 MKRN4P-201ENST00000444706 1521 ntBASIC21.16■□□□□ 0.98
PTPN9P43378 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.16■□□□□ 0.98
PTPN9P43378 NCF1B-203ENST00000435988 1254 ntBASIC21.16■□□□□ 0.98
PTPN9P43378 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.16■□□□□ 0.98
PTPN9P43378 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.16■□□□□ 0.98
PTPN9P43378 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.16■□□□□ 0.98
PTPN9P43378 AL121832.2-201ENST00000610979 668 ntBASIC21.16■□□□□ 0.98
PTPN9P43378 AL589743.5-201ENST00000616611 1050 ntBASIC21.16■□□□□ 0.98
PTPN9P43378 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
PTPN9P43378 AC083906.2-201ENST00000511578 360 ntBASIC21.15■□□□□ 0.98
PTPN9P43378 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.15■□□□□ 0.98
PTPN9P43378 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.15■□□□□ 0.98
PTPN9P43378 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PTPN9P43378 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTPN9P43378 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.15■□□□□ 0.98
PTPN9P43378 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.15■□□□□ 0.98
PTPN9P43378 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTPN9P43378 KRT17P1-201ENST00000399211 1546 ntBASIC21.14■□□□□ 0.98
PTPN9P43378 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.14■□□□□ 0.98
PTPN9P43378 AL512408.1-201ENST00000569378 2000 ntBASIC21.14■□□□□ 0.98
PTPN9P43378 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PTPN9P43378 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.14■□□□□ 0.98
PTPN9P43378 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PTPN9P43378 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.14■□□□□ 0.97
PTPN9P43378 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.14■□□□□ 0.97
PTPN9P43378 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.14■□□□□ 0.97
PTPN9P43378 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PTPN9P43378 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTPN9P43378 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PTPN9P43378 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PTPN9P43378 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN9P43378 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.13■□□□□ 0.97
PTPN9P43378 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PTPN9P43378 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.13■□□□□ 0.97
PTPN9P43378 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN9P43378 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN9P43378 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN9P43378 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTPN9P43378 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.13■□□□□ 0.97
PTPN9P43378 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.12■□□□□ 0.97
PTPN9P43378 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.12■□□□□ 0.97
PTPN9P43378 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN9P43378 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN9P43378 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN9P43378 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN9P43378 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
PTPN9P43378 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.12■□□□□ 0.97
PTPN9P43378 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.12■□□□□ 0.97
PTPN9P43378 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.12■□□□□ 0.97
PTPN9P43378 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN9P43378 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTPN9P43378 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.11■□□□□ 0.97
PTPN9P43378 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
PTPN9P43378 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.11■□□□□ 0.97
PTPN9P43378 GUSBP6-202ENST00000438529 1198 ntBASIC21.11■□□□□ 0.97
PTPN9P43378 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
PTPN9P43378 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN9P43378 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PTPN9P43378 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PTPN9P43378 DPP3P2-201ENST00000416030 1696 ntBASIC21.11■□□□□ 0.97
PTPN9P43378 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN9P43378 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PTPN9P43378 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN9P43378 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PTPN9P43378 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms