Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.42■□□□□ 0.86
CCNFP41002 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.41■□□□□ 0.86
CCNFP41002 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.41■□□□□ 0.86
CCNFP41002 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.41■□□□□ 0.86
CCNFP41002 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCNFP41002 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCNFP41002 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.4■□□□□ 0.86
CCNFP41002 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 SLC7A5P1-201ENST00000568957 537 ntBASIC20.4■□□□□ 0.86
CCNFP41002 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 RARRES2P11-201ENST00000635158 484 ntBASIC20.4■□□□□ 0.86
CCNFP41002 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCNFP41002 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CCNFP41002 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.4■□□□□ 0.86
CCNFP41002 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCNFP41002 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCNFP41002 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCNFP41002 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.39■□□□□ 0.85
CCNFP41002 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 KRT18P11-201ENST00000435214 1283 ntBASIC20.39■□□□□ 0.85
CCNFP41002 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.39■□□□□ 0.85
CCNFP41002 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCNFP41002 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCNFP41002 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.38■□□□□ 0.85
CCNFP41002 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CCNFP41002 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
CCNFP41002 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 AC137761.2-201ENST00000561729 223 ntBASIC20.38■□□□□ 0.85
CCNFP41002 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.38■□□□□ 0.85
CCNFP41002 AC145350.3-201ENST00000569033 163 ntBASIC20.38■□□□□ 0.85
CCNFP41002 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.38■□□□□ 0.85
CCNFP41002 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.38■□□□□ 0.85
CCNFP41002 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CCNFP41002 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCNFP41002 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCNFP41002 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.38■□□□□ 0.85
CCNFP41002 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCNFP41002 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.37■□□□□ 0.85
CCNFP41002 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.37■□□□□ 0.85
CCNFP41002 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.37■□□□□ 0.85
CCNFP41002 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.37■□□□□ 0.85
CCNFP41002 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.37■□□□□ 0.85
CCNFP41002 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms