Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SDC1P18827 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.35■□□□□ 0.69
SDC1P18827 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.35■□□□□ 0.69
SDC1P18827 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.35■□□□□ 0.69
SDC1P18827 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SDC1P18827 AC097381.1-201ENST00000429019 1296 ntBASIC19.35■□□□□ 0.69
SDC1P18827 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.35■□□□□ 0.69
SDC1P18827 AC034268.1-201ENST00000441047 882 ntBASIC19.35■□□□□ 0.69
SDC1P18827 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.35■□□□□ 0.69
SDC1P18827 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.35■□□□□ 0.69
SDC1P18827 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SDC1P18827 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.34■□□□□ 0.69
SDC1P18827 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
SDC1P18827 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.34■□□□□ 0.69
SDC1P18827 DPP3P2-201ENST00000416030 1696 ntBASIC19.34■□□□□ 0.69
SDC1P18827 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.34■□□□□ 0.69
SDC1P18827 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.34■□□□□ 0.69
SDC1P18827 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SDC1P18827 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.34■□□□□ 0.69
SDC1P18827 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.34■□□□□ 0.69
SDC1P18827 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.34■□□□□ 0.69
SDC1P18827 AC010536.3-201ENST00000620306 533 ntBASIC19.34■□□□□ 0.69
SDC1P18827 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SDC1P18827 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SDC1P18827 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SDC1P18827 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.33■□□□□ 0.69
SDC1P18827 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.33■□□□□ 0.68
SDC1P18827 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SDC1P18827 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.33■□□□□ 0.68
SDC1P18827 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.33■□□□□ 0.68
SDC1P18827 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SDC1P18827 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SDC1P18827 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.33■□□□□ 0.68
SDC1P18827 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SDC1P18827 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC1P18827 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 TERF1P5-201ENST00000477545 1207 ntBASIC19.32■□□□□ 0.68
SDC1P18827 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.32■□□□□ 0.68
SDC1P18827 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC1P18827 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.32■□□□□ 0.68
SDC1P18827 AC087623.3-201ENST00000607047 1098 ntBASIC19.32■□□□□ 0.68
SDC1P18827 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SDC1P18827 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.32■□□□□ 0.68
SDC1P18827 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC1P18827 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.32■□□□□ 0.68
SDC1P18827 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
SDC1P18827 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SDC1P18827 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC1P18827 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms