Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CACNA1FO60840 AC026366.1-201ENST00000488803 879 ntBASIC25.75■■□□□ 1.71
CACNA1FO60840 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
CACNA1FO60840 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 REXO2-208ENST00000539754 791 ntTSL 2 BASIC25.74■■□□□ 1.71
CACNA1FO60840 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC25.74■■□□□ 1.71
CACNA1FO60840 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC25.74■■□□□ 1.71
CACNA1FO60840 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CACNA1FO60840 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CACNA1FO60840 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CACNA1FO60840 AC023632.3-201ENST00000521633 145 ntBASIC25.73■■□□□ 1.71
CACNA1FO60840 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC25.73■■□□□ 1.71
CACNA1FO60840 AC005829.2-201ENST00000571422 1056 ntBASIC25.73■■□□□ 1.71
CACNA1FO60840 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CACNA1FO60840 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC25.73■■□□□ 1.71
CACNA1FO60840 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.73■■□□□ 1.71
CACNA1FO60840 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC25.73■■□□□ 1.71
CACNA1FO60840 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CACNA1FO60840 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC25.73■■□□□ 1.71
CACNA1FO60840 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
CACNA1FO60840 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC25.73■■□□□ 1.71
CACNA1FO60840 OR2A1-AS1-207ENST00000486094 819 ntBASIC25.73■■□□□ 1.71
CACNA1FO60840 AC008687.6-201ENST00000596318 630 ntBASIC25.73■■□□□ 1.71
CACNA1FO60840 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC25.73■■□□□ 1.71
CACNA1FO60840 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.73■■□□□ 1.71
CACNA1FO60840 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
CACNA1FO60840 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC25.72■■□□□ 1.71
CACNA1FO60840 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC25.72■■□□□ 1.71
CACNA1FO60840 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CACNA1FO60840 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC25.71■■□□□ 1.71
CACNA1FO60840 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC25.71■■□□□ 1.71
CACNA1FO60840 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
CACNA1FO60840 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.71■■□□□ 1.71
CACNA1FO60840 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC25.71■■□□□ 1.71
CACNA1FO60840 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.71■■□□□ 1.71
CACNA1FO60840 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.71■■□□□ 1.71
CACNA1FO60840 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC25.71■■□□□ 1.71
CACNA1FO60840 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC25.71■■□□□ 1.71
CACNA1FO60840 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CACNA1FO60840 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.7■■□□□ 1.71
CACNA1FO60840 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC25.7■■□□□ 1.71
CACNA1FO60840 AC073314.1-201ENST00000568729 2216 ntBASIC25.7■■□□□ 1.71
CACNA1FO60840 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC25.7■■□□□ 1.7
CACNA1FO60840 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
CACNA1FO60840 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
CACNA1FO60840 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.7■■□□□ 1.7
CACNA1FO60840 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
CACNA1FO60840 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 MMAB-206ENST00000540016 945 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.69■■□□□ 1.7
CACNA1FO60840 AL031963.3-201ENST00000606441 850 ntBASIC25.69■■□□□ 1.7
CACNA1FO60840 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CACNA1FO60840 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC25.69■■□□□ 1.7
CACNA1FO60840 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC25.69■■□□□ 1.7
CACNA1FO60840 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1FO60840 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1FO60840 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1FO60840 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.68■■□□□ 1.7
CACNA1FO60840 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1FO60840 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC25.68■■□□□ 1.7
CACNA1FO60840 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC25.68■■□□□ 1.7
CACNA1FO60840 AC092720.2-201ENST00000602388 1665 ntBASIC25.68■■□□□ 1.7
CACNA1FO60840 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CACNA1FO60840 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC25.67■■□□□ 1.7
CACNA1FO60840 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC25.67■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms