Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 AC099778.1-201ENST00000568593 1911 ntBASIC17.83■□□□□ 0.44
LMX1BO60663 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 AC007322.1-201ENST00000426983 750 ntBASIC17.83■□□□□ 0.44
LMX1BO60663 TSPY20P-201ENST00000450910 630 ntBASIC17.83■□□□□ 0.44
LMX1BO60663 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1BO60663 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.83■□□□□ 0.44
LMX1BO60663 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1BO60663 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1BO60663 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.83■□□□□ 0.44
LMX1BO60663 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.83■□□□□ 0.44
LMX1BO60663 AC104187.1-201ENST00000607510 612 ntBASIC17.83■□□□□ 0.44
LMX1BO60663 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.83■□□□□ 0.44
LMX1BO60663 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.83■□□□□ 0.44
LMX1BO60663 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LMX1BO60663 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1BO60663 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1BO60663 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
LMX1BO60663 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.82■□□□□ 0.44
LMX1BO60663 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.82■□□□□ 0.44
LMX1BO60663 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 TSPY6P-201ENST00000448518 926 ntBASIC17.82■□□□□ 0.44
LMX1BO60663 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 AC008175.2-201ENST00000612840 297 ntBASIC17.82■□□□□ 0.44
LMX1BO60663 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.82■□□□□ 0.44
LMX1BO60663 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.82■□□□□ 0.44
LMX1BO60663 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.82■□□□□ 0.44
LMX1BO60663 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LMX1BO60663 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LMX1BO60663 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
LMX1BO60663 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.82■□□□□ 0.44
LMX1BO60663 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1BO60663 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.81■□□□□ 0.44
LMX1BO60663 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
LMX1BO60663 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LMX1BO60663 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 SLC29A4P1-201ENST00000398760 971 ntBASIC17.81■□□□□ 0.44
LMX1BO60663 POU5F1P4-201ENST00000413175 1085 ntBASIC17.81■□□□□ 0.44
LMX1BO60663 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.81■□□□□ 0.44
LMX1BO60663 KRT18P6-201ENST00000555540 1265 ntBASIC17.81■□□□□ 0.44
LMX1BO60663 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1BO60663 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.81■□□□□ 0.44
LMX1BO60663 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1BO60663 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.81■□□□□ 0.44
LMX1BO60663 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
LMX1BO60663 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.8■□□□□ 0.44
LMX1BO60663 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.8■□□□□ 0.44
LMX1BO60663 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 AC138907.5-202ENST00000569484 235 ntBASIC17.8■□□□□ 0.44
LMX1BO60663 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 AC005181.1-201ENST00000604782 1256 ntBASIC17.8■□□□□ 0.44
LMX1BO60663 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 AL050303.2-201ENST00000619798 666 ntBASIC17.8■□□□□ 0.44
LMX1BO60663 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.8■□□□□ 0.44
LMX1BO60663 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms