Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 AC010141.2-201ENST00000452426 721 ntBASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 SUDS3P1-201ENST00000505831 966 ntBASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 AC087289.5-201ENST00000586076 3175 ntBASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.33■□□□□ 0.85
TRIM49D1C9J1S8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM49D1C9J1S8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM49D1C9J1S8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 AC116562.4-201ENST00000641316 2276 ntBASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 SLC7A5P2-201ENST00000553010 536 ntBASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 AL158211.5-201ENST00000623583 2518 ntBASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM49D1C9J1S8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 IRS3P-201ENST00000223076 1006 ntBASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM49D1C9J1S8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TRIM49D1C9J1S8 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms