Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 AL353807.1-201ENST00000427475 662 ntBASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 AL353708.3-201ENST00000610272 989 ntBASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PCDHGA1Q9Y5H4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 AC080038.3-201ENST00000623346 1952 ntBASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 MMP23A-201ENST00000234610 1017 ntBASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 TMPOP1-202ENST00000424642 1267 ntBASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 AP003071.4-201ENST00000562276 1284 ntBASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
PCDHGA1Q9Y5H4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 AL355355.2-201ENST00000442321 338 ntBASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 AL121829.2-201ENST00000620908 328 ntBASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PCDHGA1Q9Y5H4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.59■□□□□ 0.73
PCDHGA1Q9Y5H4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms