Protein–RNA interactions for Protein: Q9NY59

SMPD3, Sphingomyelin phosphodiesterase 3, humanhuman

Predicted RBP Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3Q9NY59 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.84■□□□□ 0.61
SMPD3Q9NY59 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMPD3Q9NY59 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMPD3Q9NY59 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SMPD3Q9NY59 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMPD3Q9NY59 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMPD3Q9NY59 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
SMPD3Q9NY59 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 TMEM179-206ENST00000616017 1645 ntBASIC18.82■□□□□ 0.6
SMPD3Q9NY59 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SMPD3Q9NY59 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 AC055733.4-201ENST00000638462 1354 ntBASIC18.81■□□□□ 0.6
SMPD3Q9NY59 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 AC093503.3-201ENST00000624917 2352 ntBASIC18.81■□□□□ 0.6
SMPD3Q9NY59 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.81■□□□□ 0.6
SMPD3Q9NY59 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.8■□□□□ 0.6
SMPD3Q9NY59 SMUG1P1-201ENST00000590640 811 ntBASIC18.8■□□□□ 0.6
SMPD3Q9NY59 AC092171.4-201ENST00000609130 632 ntBASIC18.8■□□□□ 0.6
SMPD3Q9NY59 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms