Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRFN3Q9BTN0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LRFN3Q9BTN0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LRFN3Q9BTN0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRFN3Q9BTN0 AC005332.1-201ENST00000577698 1310 ntBASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 TSPY21P-201ENST00000433481 731 ntBASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 TSPY23P-201ENST00000440136 739 ntBASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 AL138966.2-201ENST00000621997 464 ntBASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRFN3Q9BTN0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 KRT17P6-201ENST00000453795 1220 ntBASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 SLC25A1P4-201ENST00000567977 778 ntBASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 AP005242.2-201ENST00000580065 1175 ntBASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRFN3Q9BTN0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 AL022342.1-201ENST00000400363 863 ntBASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRFN3Q9BTN0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 HMGA1P5-201ENST00000412453 271 ntBASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 NIFKP9-201ENST00000419265 221 ntBASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 AL845331.1-201ENST00000424978 1190 ntBASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 AC139530.3-201ENST00000620344 690 ntBASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 KRT8P45-201ENST00000414328 1447 ntBASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.53■□□□□ 0.88
LRFN3Q9BTN0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 COX11P1-201ENST00000489116 835 ntBASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.52■□□□□ 0.88
LRFN3Q9BTN0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRFN3Q9BTN0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
LRFN3Q9BTN0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRFN3Q9BTN0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 AC004870.1-201ENST00000315132 882 ntBASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.51■□□□□ 0.87
LRFN3Q9BTN0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms