Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NKX3-1Q99801 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
NKX3-1Q99801 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.71■□□□□ 0.42
NKX3-1Q99801 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.7■□□□□ 0.42
NKX3-1Q99801 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 RARRES2P6-201ENST00000567333 442 ntBASIC17.7■□□□□ 0.42
NKX3-1Q99801 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 SMG8-203ENST00000578922 2178 ntBASIC17.7■□□□□ 0.42
NKX3-1Q99801 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NKX3-1Q99801 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.7■□□□□ 0.42
NKX3-1Q99801 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 TPRG1LP1-201ENST00000598702 760 ntBASIC17.69■□□□□ 0.42
NKX3-1Q99801 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX3-1Q99801 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NKX3-1Q99801 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 IRS3P-201ENST00000223076 1006 ntBASIC17.68■□□□□ 0.42
NKX3-1Q99801 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 AC012414.1-201ENST00000556676 535 ntBASIC17.68■□□□□ 0.42
NKX3-1Q99801 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX3-1Q99801 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX3-1Q99801 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms