Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 MIR663A-201ENST00000385250 93 ntBASIC19.43■□□□□ 0.7
VMP1Q96GC9 AC007322.4-201ENST00000509611 723 ntBASIC19.43■□□□□ 0.7
VMP1Q96GC9 AC243732.1-201ENST00000612648 864 ntBASIC19.43■□□□□ 0.7
VMP1Q96GC9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
VMP1Q96GC9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VMP1Q96GC9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VMP1Q96GC9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.43■□□□□ 0.7
VMP1Q96GC9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VMP1Q96GC9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.42■□□□□ 0.7
VMP1Q96GC9 CROCCP5-201ENST00000436658 830 ntBASIC19.42■□□□□ 0.7
VMP1Q96GC9 AC245052.3-201ENST00000450182 901 ntBASIC19.42■□□□□ 0.7
VMP1Q96GC9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 AC005181.1-201ENST00000604782 1256 ntBASIC19.42■□□□□ 0.7
VMP1Q96GC9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VMP1Q96GC9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.42■□□□□ 0.7
VMP1Q96GC9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.41■□□□□ 0.7
VMP1Q96GC9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VMP1Q96GC9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.41■□□□□ 0.7
VMP1Q96GC9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.4■□□□□ 0.7
VMP1Q96GC9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VMP1Q96GC9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VMP1Q96GC9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VMP1Q96GC9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.39■□□□□ 0.69
VMP1Q96GC9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.38■□□□□ 0.69
VMP1Q96GC9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms