Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.95■□□□□ 0.78
VRK3Q8IV63 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VRK3Q8IV63 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 GPX1P1-201ENST00000388829 606 ntBASIC19.94■□□□□ 0.78
VRK3Q8IV63 KRT18P68-201ENST00000392293 1000 ntBASIC19.94■□□□□ 0.78
VRK3Q8IV63 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 PKD1P6-201ENST00000343738 4769 ntBASIC19.94■□□□□ 0.78
VRK3Q8IV63 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VRK3Q8IV63 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VRK3Q8IV63 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 TSPY6P-201ENST00000448518 926 ntBASIC19.93■□□□□ 0.78
VRK3Q8IV63 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 AC020907.5-201ENST00000624372 1936 ntBASIC19.93■□□□□ 0.78
VRK3Q8IV63 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.93■□□□□ 0.78
VRK3Q8IV63 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VRK3Q8IV63 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VRK3Q8IV63 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.92■□□□□ 0.78
VRK3Q8IV63 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VRK3Q8IV63 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VRK3Q8IV63 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 BX276092.2-201ENST00000417668 665 ntBASIC19.91■□□□□ 0.78
VRK3Q8IV63 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VRK3Q8IV63 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 AC105020.6-201ENST00000621523 1217 ntBASIC19.91■□□□□ 0.78
VRK3Q8IV63 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VRK3Q8IV63 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.91■□□□□ 0.78
VRK3Q8IV63 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms