Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 AL138781.1-201ENST00000566567 1274 ntBASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PTCHD3Q3KNS1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.89■□□□□ 0.78
PTCHD3Q3KNS1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 AC142086.2-201ENST00000569753 217 ntBASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 AL591742.1-201ENST00000604433 565 ntBASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
PTCHD3Q3KNS1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 AC133552.2-202ENST00000575694 574 ntBASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
PTCHD3Q3KNS1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 AC007322.4-201ENST00000509611 723 ntBASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 MIR2861-201ENST00000636310 90 ntBASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD3Q3KNS1 AC020907.5-201ENST00000624372 1936 ntBASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
PTCHD3Q3KNS1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 AC016405.3-201ENST00000607710 860 ntBASIC19.85■□□□□ 0.77
PTCHD3Q3KNS1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms